C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: gypsy retrotransposon integrase 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000112844 Gin1-001 ENSMUSG00000026333 10090 + 1:97770172-97792969 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastKidneyLiverMuscleOvaryPlacentaTestisENSMUST00000112844
Transcript ID Adipose Adrenal Bladder Brain Breast Kidney Liver Muscle Ovary Placenta Testis
ENSMUST00000112844 2.115±0.15 1.304±0.45 3.061±0.18 2.213±0.00 1.499±0.00 1.947±0.44 4.153±1.32 1.340±0.13 3.227±1.00 4.173±0.23 4.196±0.24

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0015074 IEA DNA integration

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000399004 GIN1-001 protein_coding Homo_sapiens 0 1701
ENST00000508629 GIN1-003 protein_coding Homo_sapiens 0 826
ENST00000511400 GIN1-005 processed_transcript Homo_sapiens 3e-30 135
ENST00000512248 GIN1-002 nonsense_mediated_decay Homo_sapiens 0 1282
ENST00000513603 GIN1-004 retained_intron Homo_sapiens 0 427
ENST00000513747 GIN1-006 nonsense_mediated_decay Homo_sapiens 0 448

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