C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: xenotropic and polytropic retrovirus receptor 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000026469 Xpr1 10090 - 1:155275701-155417415 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000027741 Xpr1-001 155275701-155417309 protein_coding
  ENSMUST00000111774 Xpr1-002 155282668-155417415 protein_coding
  ENSMUST00000111775 Xpr1-003 155278982-155417407 protein_coding
  ENSMUST00000129271 Xpr1-004 155322772-155417395 retained_intron
  ENSMUST00000139925 Xpr1-006 155282183-155309642 retained_intron
  ENSMUST00000143529 Xpr1-005 155384176-155384662 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000027741ENSMUST00000111774ENSMUST00000111775
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000027741 3.191±0.60 4.527±1.83 5.011±0.61 17.372±8.14 3.291±1.92 8.078±2.31 4.521±0.27 10.091±1.77 2.160±0.96 3.967±1.33 12.538±1.02 4.201±1.95 3.395±1.38 3.914±1.57
ENSMUST00000111774 2.330±0.56 3.691±1.12 N/A N/A 2.644±0.29 5.546±0.00 N/A 3.928±0.00 1.872±0.75 2.755±0.30 N/A 4.113±0.70 N/A 10.940±0.50
ENSMUST00000111775 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.432±0.00 3.278±1.63

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007W1 CIL_0007W1_0002 VISTA 1:154738612-155340657
CIL_00065E CIL_00065E_0002 CGP 1:155275701-155687233

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001618 IEA virus receptor activity
GO:0004872 IDA receptor activity
GO:0005886 IEA plasma membrane
GO:0009615 IDA response to virus
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000029671 XPR1 (1 of 2) xenotropic and polytropic retrovirus receptor 1 protein_coding Danio_rerio
ENSDARG00000062449 xpr1 xenotropic and polytropic retrovirus receptor 1 protein_coding Danio_rerio
ENSG00000143324 XPR1 xenotropic and polytropic retrovirus receptor 1 protein_coding Homo_sapiens

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