C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: xenotropic and polytropic retrovirus receptor 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000027741 Xpr1-001 ENSMUSG00000026469 10090 - 1:155275701-155417309 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000027741
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000027741 3.191±0.60 4.527±1.83 5.011±0.61 17.372±8.14 3.291±1.92 8.078±2.31 4.521±0.27 10.091±1.77 2.160±0.96 3.967±1.33 12.538±1.02 4.201±1.95 3.395±1.38 3.914±1.57

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007W1 CIL_0007W1_0002 VISTA 1:154738612-155340657
CIL_00065E CIL_00065E_0002 CGP 1:155275701-155687233

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001618 IEA virus receptor activity
GO:0004872 IDA receptor activity
GO:0005886 IEA plasma membrane
GO:0009615 IDA response to virus
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000090306 xpr1-001 protein_coding Danio_rerio 0 833
ENST00000367589 XPR1-002 protein_coding Homo_sapiens 0 2097
ENST00000367590 XPR1-001 protein_coding Homo_sapiens 0 3692
ENST00000464817 XPR1-004 processed_transcript Homo_sapiens 0 333
ENST00000498177 XPR1-003 processed_transcript Homo_sapiens 0 481

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