C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: interferon induced with helicase C domain 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000026896 Ifih1 10090 - 2:62595798-62646255 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000028259 Ifih1-001 62595798-62646211 protein_coding
  ENSMUST00000112459 Ifih1-003 62597447-62646153 protein_coding
  ENSMUST00000175964 Ifih1-002 62633488-62646158 retained_intron
  ENSMUST00000176388 Ifih1-004 62629453-62639473 processed_transcript
  ENSMUST00000176431 Ifih1-005 62608250-62646255 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000028259ENSMUST00000112459ENSMUST00000175964ENSMUST00000176431
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000028259 1.816±0.21 1.998±0.00 1.674±0.01 0.119±0.07 1.690±0.35 3.185±0.37 0.625±0.14 1.509±0.32 2.209±1.00 2.756±0.36 0.267±0.06 1.213±0.67 1.055±0.41 0.088±0.02
ENSMUST00000112459 N/A N/A 1.402±0.14 0.212±0.10 N/A N/A N/A N/A 1.053±0.44 N/A 0.418±0.10 2.775±0.27 3.015±2.16 0.356±0.00
ENSMUST00000175964 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.066±0.00
ENSMUST00000176431 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.721±0.07 N/A 0.083±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005KX CIL_0005KX_0002 CGP 2:62500943-62646255
CIL_0005KY CIL_0005KY_0002 CGP 2:62595798-62694109

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003725 ISS double-stranded RNA binding
GO:0003727 ISS single-stranded RNA binding
GO:0004386 IEA helicase activity
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0008270 ISS zinc ion binding
GO:0009615 IMP response to virus
GO:0016925 ISS protein sumoylation
GO:0032727 ISS positive regulation of interferon-alpha production
GO:0032728 ISS positive regulation of interferon-beta production
GO:0042981 IEA regulation of apoptotic process
GO:0043021 IEA ribonucleoprotein complex binding
GO:0045087 IMP innate immune response
GO:0051607 IEA defense response to virus

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000018553 ifih1 interferon induced with helicase C domain 1 protein_coding Danio_rerio
ENSG00000115267 IFIH1 interferon induced with helicase C domain 1 protein_coding Homo_sapiens

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