C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: interferon induced with helicase C domain 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000028259 Ifih1-001 ENSMUSG00000026896 10090 - 2:62595798-62646211 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000028259
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000028259 1.816±0.21 1.998±0.00 1.674±0.01 0.119±0.07 1.690±0.35 3.185±0.37 0.625±0.14 1.509±0.32 2.209±1.00 2.756±0.36 0.267±0.06 1.213±0.67 1.055±0.41 0.088±0.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005KX CIL_0005KX_0002 CGP 2:62500943-62646255
CIL_0005KY CIL_0005KY_0002 CGP 2:62595798-62694109

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003725 ISS double-stranded RNA binding
GO:0003727 ISS single-stranded RNA binding
GO:0004386 IEA helicase activity
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0008270 ISS zinc ion binding
GO:0009615 IMP response to virus
GO:0016925 ISS protein sumoylation
GO:0032727 ISS positive regulation of interferon-alpha production
GO:0032728 ISS positive regulation of interferon-beta production
GO:0042981 IEA regulation of apoptotic process
GO:0043021 IEA ribonucleoprotein complex binding
GO:0045087 IMP innate immune response
GO:0051607 IEA defense response to virus

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000263642 IFIH1-001 protein_coding Homo_sapiens 0 2625
ENST00000464129 IFIH1-003 retained_intron Homo_sapiens 0 191

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