C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: SEC16 homolog A (S. cerevisiae)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000026924 Sec16a 10090 - 2:26409431-26445216 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000091252 Sec16a-201 26409433-26445216 protein_coding
  ENSMUST00000114082 Sec16a-001 26409431-26445214 protein_coding
  ENSMUST00000148306 Sec16a-004 26414379-26419756 processed_transcript
  ENSMUST00000149010 Sec16a-007 26410289-26413052 processed_transcript
  ENSMUST00000153996 Sec16a-006 26435982-26439755 protein_coding
  ENSMUST00000154486 Sec16a-005 26410719-26416230 processed_transcript
  ENSMUST00000155252 Sec16a-008 26441964-26445200 processed_transcript
  ENSMUST00000156442 Sec16a-002 26409431-26429512 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000091252ENSMUST00000114082ENSMUST00000153996ENSMUST00000156442
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000091252 8.539±4.63 5.254±1.02 1.484±0.00 5.957±0.32 11.151±1.96 8.342±4.73 3.419±0.48 4.051±0.86 3.800±2.80 8.710±2.68 1.776±0.69 11.780±4.58 5.778±2.85 10.461±4.41
ENSMUST00000114082 6.669±1.12 9.650±3.95 5.718±0.87 2.624±0.64 9.566±1.46 4.334±0.91 2.968±0.17 4.090±0.70 4.441±3.40 7.332±0.72 1.482±0.54 9.947±3.72 8.657±2.83 2.376±0.29
ENSMUST00000153996 N/A N/A N/A N/A 30.102±0.00 N/A N/A N/A N/A N/A N/A 44.591±0.00 N/A N/A
ENSMUST00000156442 6.240±0.11 10.714±2.46 6.175±0.33 4.735±1.83 N/A 11.670±1.63 2.030±0.14 3.686±0.00 2.417±0.51 N/A 1.910±0.30 9.207±3.94 10.940±5.63 5.827±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003X7 CIL_0003X7_0002 CGP 2:26396249-26445216

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000139 IEA Golgi membrane
GO:0005737 IEA cytoplasm
GO:0005794 IEA Golgi apparatus
GO:0005829 IEA cytosol
GO:0007029 IEA endoplasmic reticulum organization
GO:0021762 IEA substantia nigra development
GO:0048208 IEA COPII vesicle coating

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000063300 SEC16A SEC16 homolog A (S. cerevisiae) protein_coding Danio_rerio
ENSG00000148396 SEC16A SEC16 homolog A (S. cerevisiae) protein_coding Homo_sapiens

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