C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: SEC16 homolog A (S. cerevisiae)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000148396 SEC16A 9606 - 9:136440096-136483759 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000277537 SEC16A-004 136440101-136462961 protein_coding
  ENST00000290037 SEC16A-201 136440097-136483759 protein_coding
  ENST00000313050 SEC16A-202 136440097-136477689 protein_coding
  ENST00000313084 SEC16A-002 136440103-136448842 protein_coding
  ENST00000371706 SEC16A-001 136440101-136477115 protein_coding
  ENST00000431893 SEC16A-203 136441755-136477081 protein_coding
  ENST00000453963 SEC16A-005 136440101-136467051 protein_coding
  ENST00000467838 SEC16A-006 136440096-136444082 processed_transcript
  ENST00000472305 SEC16A-007 136462943-136466046 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000277537ENST00000290037ENST00000313050ENST00000313084ENST00000371706ENST00000431893ENST00000453963ENST00000467838
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000277537 9.124±0.00 6.256±0.00 N/A 6.895±0.00 9.196±0.00 3.720±0.00 1.400±0.00 9.055±0.00 14.147±0.00 7.894±0.00 4.046±0.00 7.463±2.93 2.102±0.34 10.982±0.00
ENST00000290037 N/A N/A N/A N/A 2.111±0.00 N/A 0.399±0.25 1.789±0.00 0.394±0.00 N/A 2.223±0.00 6.583±0.00 0.848±0.00 3.318±0.00
ENST00000313050 5.325±0.00 3.404±0.00 0.826±0.00 1.602±0.88 1.642±0.00 2.735±0.00 1.652±0.00 N/A 3.667±1.48 2.639±0.66 4.046±0.00 1.985±1.22 1.856±0.13 2.250±0.00
ENST00000313084 N/A N/A N/A 3.913±0.00 N/A N/A N/A N/A N/A N/A N/A 19.309±0.00 7.941±0.00 9.692±0.00
ENST00000371706 1.916±0.00 N/A 1.269±0.00 1.651±0.00 2.120±0.03 1.480±0.00 2.062±0.00 2.347±0.00 N/A 2.602±0.00 1.545±0.00 2.025±0.00 1.553±0.00 4.233±0.00
ENST00000431893 N/A N/A N/A N/A N/A N/A 0.205±0.00 1.630±0.00 N/A 1.224±0.00 N/A 1.255±0.00 N/A N/A
ENST00000453963 N/A 2.886±0.00 0.866±0.00 N/A 2.462±0.00 N/A 0.718±0.42 1.504±0.66 5.713±0.00 2.869±0.00 2.576±1.52 4.680±3.03 2.188±0.97 4.610±0.00
ENST00000467838 N/A N/A N/A N/A N/A N/A N/A 6.878±0.00 11.166±0.00 N/A N/A 9.238±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003X7 CIL_0003X7_0001 CGP 9:136428619-136483759

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000139 IEA Golgi membrane
GO:0005737 IDA cytoplasm
GO:0005783 IEA endoplasmic reticulum
GO:0005794 IDA Golgi apparatus
GO:0005829 IDA cytosol
GO:0007029 IDA endoplasmic reticulum organization
GO:0015031 IEA protein transport
GO:0021762 IEP substantia nigra development
GO:0048208 IEA COPII vesicle coating

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000063300 SEC16A SEC16 homolog A (S. cerevisiae) protein_coding Danio_rerio
ENSMUSG00000026924 Sec16a SEC16 homolog A (S. cerevisiae) protein_coding Mus_musculus

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