C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SEC16 homolog A (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000091252 Sec16a-201 ENSMUSG00000026924 10090 - 2:26409433-26445216 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000091252
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000091252 8.539±4.63 5.254±1.02 1.484±0.00 5.957±0.32 11.151±1.96 8.342±4.73 3.419±0.48 4.051±0.86 3.800±2.80 8.710±2.68 1.776±0.69 11.780±4.58 5.778±2.85 10.461±4.41

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003X7 CIL_0003X7_0002 CGP 2:26396249-26445216

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000139 IEA Golgi membrane
GO:0005737 IEA cytoplasm
GO:0005794 IEA Golgi apparatus
GO:0005829 IEA cytosol
GO:0007029 IEA endoplasmic reticulum organization
GO:0021762 IEA substantia nigra development
GO:0048208 IEA COPII vesicle coating

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000277537 SEC16A-004 protein_coding Homo_sapiens 0 822
ENST00000290037 SEC16A-201 protein_coding Homo_sapiens 0 3064
ENST00000313050 SEC16A-202 protein_coding Homo_sapiens 0 3064
ENST00000313084 SEC16A-002 protein_coding Homo_sapiens 0 303
ENST00000371706 SEC16A-001 protein_coding Homo_sapiens 0 3064
ENST00000431893 SEC16A-203 protein_coding Homo_sapiens 0 3064
ENST00000453963 SEC16A-005 protein_coding Homo_sapiens 0 1727

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