Institute of Cardiovascular Regeneration Webtool Repository

C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Accession	Transcript Name	Contained in Gene	Tax ID	Strand	Position	Biotype
Transcript Info
Description:	CLP1, cleavage and polyadenylation factor I subunit
ENSMUST00000028475	Clp1-001	ENSMUSG00000027079	10090	-	2:84723122-84727350	protein_coding

Expression Patterns

Transcript ID	Adipose	Adrenal	Bladder	Brain	Breast	Colon	Heart	Kidney	Liver	Lung	Muscle	Ovary	Placenta	Testis
ENSMUST00000028475	5.420±1.53	4.652±0.97	7.730±1.70	5.191±2.14	6.096±0.75	5.223±0.77	2.051±0.31	5.139±0.61	15.036±9.26	5.603±0.36	1.603±0.18	7.366±0.90	10.494±1.97	16.482±3.14

Conserved Regions
Gene is not located within a conserved region.

Gene Ontology
GO ID	Evidence Type	GO Description
GO:0000214	ISS	tRNA-intron endonuclease complex
GO:0005524	IEA	ATP binding
GO:0005849	IEA	mRNA cleavage factor complex
GO:0006388	ISS	tRNA splicing, via endonucleolytic cleavage and ligation
GO:0008219	IEA	cell death
GO:0016310	IEA	phosphorylation
GO:0021695	IMP	cerebellar cortex development
GO:0030423	ISS	targeting of mRNA for destruction involved in RNA interference
GO:0031124	IEA	mRNA 3'-end processing
GO:0035087	ISS	siRNA loading onto RISC involved in RNA interference
GO:0046404	IEA	ATP-dependent polydeoxyribonucleotide 5'-hydroxyl-kinase activity
GO:0051733	ISS	polydeoxyribonucleotide kinase activity
GO:0051736	ISS	ATP-dependent polyribonucleotide 5'-hydroxyl-kinase activity

Homologs
ENSEMBL Accession	Gene Name	Biotype	Species	E-Value	Bit Score
ENST00000302731	CLP1-003	protein_coding	Homo_sapiens	0	859
ENST00000525602	CLP1-002	protein_coding	Homo_sapiens	0	1663
ENST00000529430	CLP1-004	protein_coding	Homo_sapiens	0	1679
ENST00000529773	CLP1-006	protein_coding	Homo_sapiens	0	383
ENST00000533682	CLP1-001	protein_coding	Homo_sapiens	0	1679
ENST00000533905	CLP1-005	protein_coding	Homo_sapiens	0	549

Loading