C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: CLP1, cleavage and polyadenylation factor I subunit
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000165219 Clp1-201 ENSMUSG00000027079 10090 - 2:84722104-84727242 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastColonENSMUST00000165219
Transcript ID Brain Breast Colon
ENSMUST00000165219 0.208±0.00 0.782±0.00 0.723±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000214 ISS tRNA-intron endonuclease complex
GO:0005524 IEA ATP binding
GO:0005634 IEA nucleus
GO:0005849 IEA mRNA cleavage factor complex
GO:0006388 ISS tRNA splicing, via endonucleolytic cleavage and ligation
GO:0008219 IEA cell death
GO:0016310 IEA phosphorylation
GO:0021695 IMP cerebellar cortex development
GO:0030423 ISS targeting of mRNA for destruction involved in RNA interference
GO:0031124 IEA mRNA 3'-end processing
GO:0035087 ISS siRNA loading onto RISC involved in RNA interference
GO:0046404 IEA ATP-dependent polydeoxyribonucleotide 5'-hydroxyl-kinase activity
GO:0051733 ISS polydeoxyribonucleotide kinase activity
GO:0051736 ISS ATP-dependent polyribonucleotide 5'-hydroxyl-kinase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000302731 CLP1-003 protein_coding Homo_sapiens 0 859
ENST00000525602 CLP1-002 protein_coding Homo_sapiens 0 1663
ENST00000529430 CLP1-004 protein_coding Homo_sapiens 0 1679
ENST00000529773 CLP1-006 protein_coding Homo_sapiens 0 383
ENST00000533682 CLP1-001 protein_coding Homo_sapiens 0 1679
ENST00000533905 CLP1-005 protein_coding Homo_sapiens 0 549

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