C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: solute carrier family 12, member 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000028549 Slc12a6-001 ENSMUSG00000027130 10090 + 2:112266819-112363156 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000028549
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000028549 6.081±0.62 5.180±0.62 6.235±1.49 9.848±4.76 4.909±0.00 4.364±1.81 4.427±0.58 1.945±0.41 5.775±0.97 3.139±1.14 6.876±1.58 3.110±1.07 3.857±2.14

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000ZB CIL_0000ZB_0002 CGP 2:112265825-112406319

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0006813 IEA potassium ion transport
GO:0006821 ISS chloride transport
GO:0015379 ISS potassium:chloride symporter activity
GO:0016021 IEA integral component of membrane
GO:0016323 IDA basolateral plasma membrane
GO:0071477 ISS cellular hypotonic salinity response
GO:1902476 IEA chloride transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000290209 SLC12A6-001 protein_coding Homo_sapiens 0 4244
ENST00000354181 SLC12A6-003 protein_coding Homo_sapiens 0 4588
ENST00000397702 SLC12A6-008 protein_coding Homo_sapiens 0 4479
ENST00000397707 SLC12A6-002 protein_coding Homo_sapiens 0 4178
ENST00000458406 SLC12A6-006 protein_coding Homo_sapiens 0 4475
ENST00000558589 SLC12A6-004 protein_coding Homo_sapiens 0 4564
ENST00000558667 SLC12A6-009 protein_coding Homo_sapiens 0 4588
ENST00000558950 SLC12A6-015 retained_intron Homo_sapiens 0 710
ENST00000559076 SLC12A6-016 retained_intron Homo_sapiens 0 405
ENST00000559236 SLC12A6-011 protein_coding Homo_sapiens 0 547
ENST00000559441 SLC12A6-019 retained_intron Homo_sapiens 0 357
ENST00000559523 SLC12A6-005 nonsense_mediated_decay Homo_sapiens 0 4357
ENST00000559664 SLC12A6-007 nonsense_mediated_decay Homo_sapiens 0 3504
ENST00000560023 SLC12A6-014 retained_intron Homo_sapiens 0 538
ENST00000560164 SLC12A6-017 protein_coding Homo_sapiens 0 3657
ENST00000560332 SLC12A6-018 protein_coding Homo_sapiens 0 582
ENST00000560611 SLC12A6-010 protein_coding Homo_sapiens 0 4588
ENST00000561080 SLC12A6-020 nonsense_mediated_decay Homo_sapiens 0 3504
ENST00000561120 SLC12A6-012 protein_coding Homo_sapiens 0 634

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