C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: autophagy related 13
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000076803 Atg13-002 ENSMUSG00000027244 10090 - 2:91674618-91710576 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000076803
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000076803 9.319±1.71 27.779±3.72 14.050±0.95 6.466±2.54 10.516±3.29 15.255±1.24 4.591±1.45 11.653±1.38 10.693±4.26 11.613±4.22 2.518±1.47 15.829±4.53 12.599±8.26 9.948±4.40

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000182 CIL_000182_0002 CGP 2:91649860-91710576
CIL_000181 CIL_000181_0002 CGP 2:91674618-91721545

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000045 ISS autophagic vacuole assembly
GO:0000407 IDA pre-autophagosomal structure
GO:0005515 IPI protein binding
GO:0005829 IDA cytosol
GO:0019901 IBA protein kinase binding
GO:0034273 IBA ATG1/UKL1 signaling complex
GO:0070969 IPI ULK1-ATG13-FIP200 complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000359513 ATG13-006 protein_coding Homo_sapiens 0 1151
ENST00000395549 ATG13-032 protein_coding Homo_sapiens 0 800
ENST00000524625 ATG13-001 protein_coding Homo_sapiens 0 1895
ENST00000525009 ATG13-018 protein_coding Homo_sapiens 0 514
ENST00000525850 ATG13-011 processed_transcript Homo_sapiens 0 592
ENST00000526485 ATG13-021 processed_transcript Homo_sapiens 2e-27 126
ENST00000526508 ATG13-004 protein_coding Homo_sapiens 0 1035
ENST00000527907 ATG13-014 retained_intron Homo_sapiens 0 575
ENST00000528145 ATG13-012 retained_intron Homo_sapiens 0 592
ENST00000528494 ATG13-008 protein_coding Homo_sapiens 0 1147
ENST00000528704 ATG13-015 retained_intron Homo_sapiens 1.99965e-42 176
ENST00000528984 ATG13-013 retained_intron Homo_sapiens 0 381
ENST00000529395 ATG13-019 nonsense_mediated_decay Homo_sapiens 0 307
ENST00000529655 ATG13-003 protein_coding Homo_sapiens 0 1895
ENST00000530500 ATG13-005 protein_coding Homo_sapiens 0 1796
ENST00000531933 ATG13-017 protein_coding Homo_sapiens 0 241
ENST00000532067 ATG13-020 nonsense_mediated_decay Homo_sapiens 1e-27 126
ENST00000533316 ATG13-016 retained_intron Homo_sapiens 0 508
ENST00000533325 ATG13-024 protein_coding Homo_sapiens 0 486
ENST00000534610 ATG13-007 retained_intron Homo_sapiens 0 1147
ENST00000577256 ATG13-031 protein_coding Homo_sapiens 0 252
ENST00000578626 ATG13-034 protein_coding Homo_sapiens 3e-36 156
ENST00000580238 ATG13-027 protein_coding Homo_sapiens 4e-35 152
ENST00000581416 ATG13-026 protein_coding Homo_sapiens 0 220
ENST00000582547 ATG13-028 protein_coding Homo_sapiens 1.99965e-42 176

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