C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ubiquitin protein ligase E3 component n-recognin 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000027272 Ubr1 10090 - 2:120860269-120970715 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000028728 Ubr1-001 120860269-120970715 protein_coding
  ENSMUST00000129790 Ubr1-005 120901594-120915023 processed_transcript
  ENSMUST00000133408 Ubr1-002 120945458-120970613 retained_intron
  ENSMUST00000135891 Ubr1-006 120873050-120889849 processed_transcript
  ENSMUST00000138824 Ubr1-003 120962114-120970692 retained_intron
  ENSMUST00000153868 Ubr1-007 120862573-120871526 processed_transcript
  ENSMUST00000154023 Ubr1-004 120921435-120930342 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000028728ENSMUST00000135891
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000028728 3.024±0.51 2.829±0.73 4.137±1.44 6.315±3.76 2.891±0.65 1.649±0.45 1.998±0.42 2.840±0.34 2.159±1.55 6.387±0.67 2.696±0.54 3.713±1.75 3.054±0.98 2.517±0.51
ENSMUST00000135891 9.015±2.13 11.318±1.70 N/A N/A 11.456±1.98 6.524±1.60 4.651±1.49 7.141±1.00 4.217±1.19 18.337±3.66 N/A 14.470±2.46 N/A 4.758±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005YF CIL_0005YF_0002 CGP 2:120732816-120970715

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000151 IGI ubiquitin ligase complex
GO:0000502 IGI proteasome complex
GO:0004842 IGI ubiquitin-protein transferase activity
GO:0005515 IPI protein binding
GO:0005737 IEA cytoplasm
GO:0006511 IMP ubiquitin-dependent protein catabolic process
GO:0008270 IEA zinc ion binding
GO:0016567 IEA protein ubiquitination
GO:0016874 IEA ligase activity
GO:0032007 ISS negative regulation of TOR signaling
GO:0070728 IEA leucine binding
GO:0071233 ISS cellular response to leucine

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000060480 ubr1 ubiquitin protein ligase E3 component n-recognin 1 protein_coding Danio_rerio
ENSG00000159459 UBR1 ubiquitin protein ligase E3 component n-recognin 1 protein_coding Homo_sapiens

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