C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ubiquitin protein ligase E3 component n-recognin 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000159459 UBR1 9606 - 15:42942897-43106113 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000290650 UBR1-001 42942897-43106101 protein_coding
  ENST00000546274 UBR1-002 43015656-43106113 protein_coding
  ENST00000562173 UBR1-008 42945187-42950574 retained_intron
  ENST00000563239 UBR1-009 43043344-43106088 nonsense_mediated_decay
  ENST00000564540 UBR1-004 43021085-43027805 nonsense_mediated_decay
  ENST00000566493 UBR1-007 42988493-42998199 retained_intron
  ENST00000568782 UBR1-006 43003254-43015869 processed_transcript
  ENST00000569066 UBR1-003 43021085-43037829 nonsense_mediated_decay
  ENST00000569243 UBR1-005 43021081-43026663 protein_coding
  ENST00000569337 UBR1-011 43082711-43106107 nonsense_mediated_decay
  ENST00000569971 UBR1-010 43043214-43059804 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000290650ENST00000546274
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000290650 2.410±0.00 1.770±0.00 0.771±0.00 2.833±1.01 1.656±0.31 2.259±0.05 2.566±1.43 1.335±0.21 0.988±0.82 1.606±0.72 1.804±1.33 2.758±1.34 1.384±0.02 5.409±1.44
ENST00000546274 N/A N/A 2.299±0.00 N/A 4.226±0.00 1.690±0.00 0.745±0.00 N/A 1.524±0.00 1.872±0.00 N/A 1.906±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005YF CIL_0005YF_0001 CGP 15:42738734-43106113

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000151 IEA ubiquitin ligase complex
GO:0000502 IEA proteasome complex
GO:0004842 IEA ubiquitin-protein transferase activity
GO:0005515 IEA protein binding
GO:0005737 IEA cytoplasm
GO:0006511 IEA ubiquitin-dependent protein catabolic process
GO:0008270 IEA zinc ion binding
GO:0016567 IEA protein ubiquitination
GO:0016874 IEA ligase activity
GO:0030163 IEA protein catabolic process
GO:0032007 IMP negative regulation of TOR signaling
GO:0070728 IDA leucine binding
GO:0071233 IDA cellular response to leucine

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000060480 ubr1 ubiquitin protein ligase E3 component n-recognin 1 protein_coding Danio_rerio
ENSMUSG00000027272 Ubr1 ubiquitin protein ligase E3 component n-recognin 1 protein_coding Mus_musculus

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