C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: attractin
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000027312 Atrn 10090 + 2:130906495-131030333 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000028781 Atrn-001 130906495-131030333 protein_coding
  ENSMUST00000132557 Atrn-005 130982785-130994575 retained_intron
  ENSMUST00000134964 Atrn-002 130906501-131005415 retained_intron
  ENSMUST00000151364 Atrn-003 130996177-131005443 retained_intron
  ENSMUST00000156982 Atrn-004 130906931-130935932 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000028781ENSMUST00000134964
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000028781 8.734±0.73 6.855±0.82 40.151±0.81 13.602±3.78 4.751±0.83 4.528±0.79 3.920±0.21 7.055±0.31 6.611±2.60 6.709±0.27 3.127±0.20 6.989±1.36 6.244±2.55 1.978±0.78
ENSMUST00000134964 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.771±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00032V CIL_00032V_0002 CGP 2:130706200-131030333
CIL_00067S CIL_00067S_0003 CGP 2:130906495-131043088

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004872 IPI receptor activity
GO:0005515 IPI protein binding
GO:0005615 IEA extracellular space
GO:0005737 IEA cytoplasm
GO:0005886 IEA plasma membrane
GO:0006954 IEA inflammatory response
GO:0006979 IEA response to oxidative stress
GO:0016021 IEA integral component of membrane
GO:0021549 IMP cerebellum development
GO:0030246 IEA carbohydrate binding
GO:0040014 IMP regulation of multicellular organism growth
GO:0042552 IMP myelination
GO:0043473 IMP pigmentation
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000062164 atrn attractin protein_coding Danio_rerio
ENSG00000088812 ATRN attractin protein_coding Homo_sapiens

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