C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00067S_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000062164-ENSDARG00000056651 CGP 7955 13:13867131-14348537
GeneTranscriptPositionBiotype
ENSDARG00000056651 (gfra4)
GDNF family receptor alpha 4 		ENSDART00000079176 (gfra4-201) 14056011-14167138 protein_coding
ENSDART00000141103 (gfra4-001) 14052306-14348537 protein_coding
ENSDARG00000062164 (atrn)
attractin 		ENSDART00000089528 (atrn-201) 13867336-14045637 protein_coding
ENSDART00000131875 (atrn-001) 13867131-14042997 protein_coding
ENSDARG00000094124 (si:dkey-259n11.3)
si:dkey-259n11.3 		ENSDART00000142094 (si:dkey-259n11.3-001) 14047998-14056256 processed_transcript
CIL_00067S_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000088812-ENSG00000125861 CGP 9606 20:3471040-3663399
GeneTranscriptPositionBiotype
ENSG00000088812 (ATRN)
attractin 		ENST00000262919 (ATRN-002) 3471040-3651122 protein_coding
ENST00000446916 (ATRN-001) 3471108-3615947 protein_coding
ENSG00000125861 (GFRA4)
GDNF family receptor alpha 4 		ENST00000290417 (GFRA4-001) 3659292-3663399 protein_coding
ENST00000319242 (GFRA4-002) 3659909-3663399 protein_coding
ENST00000477160 (GFRA4-003) 3660625-3663399 nonsense_mediated_decay
ENSG00000230568 (SF3A3P1)
splicing factor 3a, subunit 3 pseudogene 1 		ENST00000446317 (SF3A3P1-001) 3489529-3491005 processed_pseudogene
ENSG00000264957 (AL109805.1)
 ENST00000579046 (AL109805.1-201) 3507007-3507112 miRNA
CIL_00067S_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000027312-ENSMUSG00000027316 CGP 10090 2:130906495-131043088
GeneTranscriptPositionBiotype
ENSMUSG00000027312 (Atrn)
attractin 		ENSMUST00000028781 (Atrn-001) 130906495-131030333 protein_coding
ENSMUST00000132557 (Atrn-005) 130982785-130994575 retained_intron
ENSMUST00000134964 (Atrn-002) 130906501-131005415 retained_intron
ENSMUST00000151364 (Atrn-003) 130996177-131005443 retained_intron
ENSMUST00000156982 (Atrn-004) 130906931-130935932 retained_intron
ENSMUSG00000027316 (Gfra4)
glial cell line derived neurotrophic factor family receptor alpha 4 		ENSMUST00000028787 (Gfra4-004) 131040176-131042682 protein_coding
ENSMUST00000066958 (Gfra4-002) 131040208-131043088 protein_coding
ENSMUST00000110234 (Gfra4-006) 131041232-131042682 protein_coding
ENSMUST00000110235 (Gfra4-003) 131041232-131043088 protein_coding
ENSMUST00000110239 (Gfra4-005) 131040208-131042682 protein_coding
ENSMUST00000110240 (Gfra4-001) 131039632-131043088 protein_coding
ENSMUST00000136569 (Gfra4-007) 131039640-131041511 retained_intron
ENSMUST00000156509 (Gfra4-008) 131039639-131041457 retained_intron
ENSMUSG00000083953 (Gm14049)
predicted gene 14049 		ENSMUST00000121009 (Gm14049-001) 130987984-130988619 processed_pseudogene

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00067S_0001ENSDARG00000056651ENSDART00000079176ENSDART00000141103ENSDARG00000062164ENSDART00000089528ENSDART00000131875ENSDARG00000094124ENSDART00000142094CIL_00067S_0002ENSG00000088812ENST00000262919ENST00000446916ENSG00000125861ENST00000290417ENST00000319242ENST00000477160ENSG00000230568ENST00000446317ENSG00000264957ENST00000579046CIL_00067S_0003ENSMUSG00000027312ENSMUST00000028781ENSMUST00000132557ENSMUST00000134964ENSMUST00000151364ENSMUST00000156982ENSMUSG00000027316ENSMUST00000028787ENSMUST00000066958ENSMUST00000110234ENSMUST00000110235ENSMUST00000110239ENSMUST00000110240ENSMUST00000136569ENSMUST00000156509ENSMUSG00000083953ENSMUST00000121009
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00067S_0001ENSDARG00000056651ENSDART00000079176ENSDART00000141103ENSDARG00000062164ENSDART00000089528ENSDART00000131875ENSDARG00000094124ENSDART00000142094CIL_00067S_0002ENSG00000088812ENST00000262919ENST00000446916ENSG00000125861ENST00000290417ENSG00000230568ENST00000446317ENSG00000264957ENST00000579046CIL_00067S_0003ENSMUSG00000027312ENSMUST00000028781ENSMUST00000134964ENSMUSG00000027316ENSMUST00000028787ENSMUST00000110234ENSMUST00000110235ENSMUST00000110239ENSMUST00000136569ENSMUST00000156509ENSMUSG00000083953ENSMUST00000121009
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000056651 ENSDART00000079176 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.453±0.00 N/A N/A N/A
ENSDART00000141103 N/A N/A N/A 11.368±0.00 N/A N/A 0.015±0.00 0.067±0.02 0.059±0.00 N/A 0.243±0.00 N/A N/A N/A
ENSDARG00000062164 ENSDART00000089528 N/A N/A N/A 13.168±2.69 N/A N/A 2.261±0.89 1.636±0.00 0.567±0.00 N/A 2.991±0.00 N/A N/A N/A
ENSDART00000131875 N/A N/A N/A 3.862±0.00 N/A N/A N/A N/A 1.087±0.00 N/A 0.713±0.00 N/A N/A N/A
ENSDARG00000094124 ENSDART00000142094 N/A N/A N/A N/A N/A N/A N/A 0.232±0.00 N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000088812 ENST00000262919 3.249±0.00 1.970±0.00 3.855±0.00 11.013±0.09 3.590±0.30 2.159±0.31 2.830±1.34 9.109±1.80 4.392±1.15 3.131±0.62 2.350±0.00 4.173±0.66 3.788±0.56 4.822±2.03
ENST00000446916 4.866±0.00 2.869±0.00 N/A N/A 2.628±0.00 0.742±0.00 2.968±1.03 3.979±0.53 3.048±1.51 1.307±0.00 0.635±0.12 2.634±0.84 9.301±0.34 2.559±0.68
ENSG00000125861 ENST00000290417 N/A N/A N/A 0.091±0.00 N/A N/A N/A N/A N/A N/A N/A 0.210±0.00 N/A 0.502±0.00
ENST00000319242 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000477160 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000230568 ENST00000446317 N/A 0.045±0.00 0.216±0.00 0.055±0.00 0.045±0.00 0.538±0.00 0.049±0.00 0.027±0.00 N/A N/A N/A 0.191±0.17 0.026±0.00 0.048±0.02
ENSG00000264957 ENST00000579046 N/A N/A N/A 0.411±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000027312 ENSMUST00000028781 8.734±0.73 6.855±0.82 40.151±0.81 13.602±3.78 4.751±0.83 4.528±0.79 3.920±0.21 7.055±0.31 6.611±2.60 6.709±0.27 3.127±0.20 6.989±1.36 6.244±2.55 1.978±0.78
ENSMUST00000132557 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000134964 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.771±0.00 N/A N/A
ENSMUST00000151364 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000156982 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000027316 ENSMUST00000028787 N/A 1.538±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000066958 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000110234 N/A 4.273±2.04 N/A N/A N/A 2.804±0.94 N/A N/A N/A N/A N/A 6.205±0.54 N/A N/A
ENSMUST00000110235 N/A 7.873±0.23 N/A N/A 4.357±0.00 2.879±0.58 N/A N/A N/A N/A N/A 8.699±0.00 N/A N/A
ENSMUST00000110239 N/A N/A N/A N/A N/A N/A N/A N/A 0.022±0.00 N/A N/A N/A N/A N/A
ENSMUST00000110240 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000136569 2.801±1.77 2.910±0.66 17.719±3.55 7.808±1.88 2.037±0.39 2.674±0.62 2.129±0.41 0.819±0.24 0.106±0.05 0.830±0.02 0.245±0.08 3.683±1.62 0.534±0.33 2.122±1.18
ENSMUST00000156509 6.475±3.21 6.735±1.57 43.991±1.22 13.862±6.89 5.246±0.88 7.186±1.29 5.158±0.69 1.922±0.53 0.149±0.10 1.831±0.31 0.504±0.20 8.602±4.23 1.286±0.59 21.761±9.97
ENSMUSG00000083953 ENSMUST00000121009 0.074±0.01 N/A 0.368±0.09 0.134±0.04 0.150±0.00 0.161±0.00 N/A N/A 0.054±0.03 N/A N/A N/A 0.106±0.03 1.331±0.27

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