C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: proliferating cell nuclear antigen
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000027342 Pcna 10090 - 2:132249162-132253314 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000028817 Pcna-001 132249162-132253314 protein_coding
  ENSMUST00000135181 Pcna-004 132251329-132252967 retained_intron
  ENSMUST00000136676 Pcna-002 132249877-132252596 processed_transcript
  ENSMUST00000140338 Pcna-005 132249162-132250170 retained_intron
  ENSMUST00000149627 Pcna-003 132251429-132252602 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000028817ENSMUST00000136676
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000028817 22.840±13.60 52.942±15.12 33.336±6.97 49.909±38.29 32.716±15.72 52.564±5.60 12.115±2.03 21.214±1.72 157.466±170.59 42.407±3.91 6.971±0.72 49.795±18.83 45.468±38.33 42.156±19.72
ENSMUST00000136676 N/A N/A N/A 22.079±0.00 N/A N/A N/A N/A N/A N/A N/A 62.036±0.00 68.547±47.32 81.900±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003M9 CIL_0003M9_0002 CGP 2:132239492-132253314
CIL_0004G1 CIL_0004G1_0002 CGP 2:132249162-132312050

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0000307 IPI cyclin-dependent protein kinase holoenzyme complex
GO:0003677 IEA DNA binding
GO:0005515 IPI protein binding
GO:0005622 IDA intracellular
GO:0005634 IDA nucleus
GO:0005652 IDA nuclear lamina
GO:0005657 IDA replication fork
GO:0005813 ISO centrosome
GO:0006272 IBA leading strand elongation
GO:0006275 IEA regulation of DNA replication
GO:0006287 IDA base-excision repair, gap-filling
GO:0006298 IBA mismatch repair
GO:0019985 ISS translesion synthesis
GO:0030337 IEA DNA polymerase processivity factor activity
GO:0032077 ISS positive regulation of deoxyribonuclease activity
GO:0043626 IBA PCNA complex
GO:0070557 ISS PCNA-p21 complex

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000054155 pcna proliferating cell nuclear antigen protein_coding Danio_rerio
ENSG00000132646 PCNA proliferating cell nuclear antigen protein_coding Homo_sapiens

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