C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003M9_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000089063-ENSG00000132646 CGP 9606 20:5068232-5126626
GeneTranscriptPositionBiotype
ENSG00000089063 (TMEM230)
transmembrane protein 230 		ENST00000202834 (TMEM230-006) 5099840-5113103 protein_coding
ENST00000342308 (TMEM230-003) 5099840-5113087 protein_coding
ENST00000379276 (TMEM230-004) 5106188-5112753 protein_coding
ENST00000379277 (TMEM230-010) 5099840-5112904 protein_coding
ENST00000379279 (TMEM230-008) 5099840-5113049 protein_coding
ENST00000379283 (TMEM230-001) 5099840-5113050 protein_coding
ENST00000379286 (TMEM230-007) 5099840-5113042 protein_coding
ENST00000379299 (TMEM230-005) 5099840-5113042 protein_coding
ENST00000492419 (TMEM230-009) 5099840-5112969 processed_transcript
ENST00000612323 (TMEM230-011) 5068483-5113087 protein_coding
ENST00000615008 (TMEM230-012) 5068232-5112790 protein_coding
ENSG00000132646 (PCNA)
proliferating cell nuclear antigen 		ENST00000379143 (PCNA-001) 5114953-5120026 protein_coding
ENST00000379160 (PCNA-002) 5114953-5126626 protein_coding
ENSG00000212517 (SNORA26)
Small nucleolar RNA SNORA26 		ENST00000391215 (SNORA26.1-205) 5121417-5121539 snoRNA
CIL_0003M9_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000027341-ENSMUSG00000027342 CGP 10090 2:132239492-132253314
GeneTranscriptPositionBiotype
ENSMUSG00000027341 (Tmem230)
transmembrane protein 230 		ENSMUST00000028816 (Tmem230-001) 132239492-132247807 protein_coding
ENSMUST00000110163 (Tmem230-003) 132239492-132247769 protein_coding
ENSMUST00000110164 (Tmem230-005) 132239492-132247654 protein_coding
ENSMUST00000141813 (Tmem230-004) 132245852-132247756 retained_intron
ENSMUST00000143782 (Tmem230-002) 132245320-132247759 processed_transcript
ENSMUST00000180286 (Tmem230-201) 132239494-132247788 protein_coding
ENSMUSG00000027342 (Pcna)
proliferating cell nuclear antigen 		ENSMUST00000028817 (Pcna-001) 132249162-132253314 protein_coding
ENSMUST00000135181 (Pcna-004) 132251329-132252967 retained_intron
ENSMUST00000136676 (Pcna-002) 132249877-132252596 processed_transcript
ENSMUST00000140338 (Pcna-005) 132249162-132250170 retained_intron
ENSMUST00000149627 (Pcna-003) 132251429-132252602 retained_intron

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003M9_0001ENSG00000089063ENST00000202834ENST00000342308ENST00000379276ENST00000379277ENST00000379279ENST00000379283ENST00000379286ENST00000379299ENST00000492419ENST00000612323ENST00000615008ENSG00000132646ENST00000379143ENST00000379160ENSG00000212517ENST00000391215CIL_0003M9_0002ENSMUSG00000027341ENSMUST00000028816ENSMUST00000110163ENSMUST00000110164ENSMUST00000141813ENSMUST00000143782ENSMUST00000180286ENSMUSG00000027342ENSMUST00000028817ENSMUST00000135181ENSMUST00000136676ENSMUST00000140338ENSMUST00000149627
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003M9_0001ENSG00000089063ENST00000202834ENST00000342308ENST00000379279ENST00000379299ENSG00000132646ENST00000379143ENST00000379160ENSG00000212517ENST00000391215CIL_0003M9_0002ENSMUSG00000027341ENSMUST00000028816ENSMUST00000110163ENSMUST00000110164ENSMUST00000143782ENSMUST00000180286ENSMUSG00000027342ENSMUST00000028817ENSMUST00000136676
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000089063 ENST00000202834 39.347±0.00 42.755±0.00 7.101±0.00 22.449±3.68 44.500±30.90 22.065±9.93 14.328±8.65 36.415±8.68 20.207±5.65 17.692±7.27 18.464±5.98 42.465±18.16 45.582±4.44 28.123±5.98
ENST00000342308 N/A N/A N/A 5.084±0.00 N/A N/A 1.685±0.00 N/A 4.176±0.00 2.543±0.00 N/A N/A N/A 8.995±0.00
ENST00000379276 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000379277 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000379279 N/A N/A N/A 7.068±0.00 N/A 7.386±5.41 4.483±0.00 N/A N/A N/A 4.548±0.00 N/A 8.004±0.00 5.085±0.00
ENST00000379283 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000379286 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000379299 N/A N/A N/A N/A 3.393±0.00 N/A 2.090±1.13 9.037±0.00 4.899±0.00 8.541±0.00 N/A 9.947±2.45 N/A N/A
ENST00000492419 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000612323 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000615008 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000132646 ENST00000379143 9.777±0.00 20.969±0.00 N/A 7.845±2.07 11.019±0.55 12.652±1.59 7.406±0.00 15.497±9.25 6.043±0.73 5.552±0.00 4.111±1.05 47.770±43.79 40.108±4.92 45.300±9.44
ENST00000379160 1.602±0.00 N/A 2.753±0.00 N/A 2.077±0.00 1.584±0.00 2.210±0.47 N/A N/A 4.693±1.77 2.537±0.00 13.783±11.04 N/A 6.402±0.00
ENSG00000212517 ENST00000391215 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.492±0.00 N/A 3.244±2.41
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000027341 ENSMUST00000028816 16.645±3.17 20.789±3.80 14.792±1.36 8.387±5.71 15.945±4.35 14.246±5.43 10.437±1.62 13.499±0.99 9.406±1.48 14.269±1.11 11.238±0.70 21.289±9.72 7.386±5.52 22.048±10.79
ENSMUST00000110163 4.428±1.08 8.549±1.41 2.870±0.00 1.170±0.70 5.547±0.23 4.663±0.64 2.243±0.40 3.691±0.65 3.618±0.91 3.792±0.33 2.355±0.35 6.580±3.80 2.510±0.70 N/A
ENSMUST00000110164 2.225±0.00 N/A 1.328±0.13 1.098±0.58 1.406±0.16 N/A N/A N/A 1.523±0.30 2.058±0.00 N/A 1.079±0.29 0.627±0.17 0.184±0.00
ENSMUST00000141813 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000143782 N/A 47.995±21.05 N/A N/A 30.741±3.51 25.809±9.11 N/A 17.804±2.44 9.324±1.35 23.515±4.47 N/A 73.323±12.76 N/A 63.867±6.33
ENSMUST00000180286 N/A N/A N/A N/A 3.760±0.00 N/A N/A N/A N/A N/A N/A 4.323±3.12 2.021±0.34 0.695±0.00
ENSMUSG00000027342 ENSMUST00000028817 22.840±13.60 52.942±15.12 33.336±6.97 49.909±38.29 32.716±15.72 52.564±5.60 12.115±2.03 21.214±1.72 157.466±170.59 42.407±3.91 6.971±0.72 49.795±18.83 45.468±38.33 42.156±19.72
ENSMUST00000135181 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000136676 N/A N/A N/A 22.079±0.00 N/A N/A N/A N/A N/A N/A N/A 62.036±0.00 68.547±47.32 81.900±0.00
ENSMUST00000140338 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000149627 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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