C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: N-ethylmaleimide sensitive fusion protein attachment protein beta
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000027438 Napb 10090 - 2:148693985-148732467 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000028926 Napb-001 148693985-148732467 protein_coding
  ENSMUST00000136513 Napb-002 148693985-148732413 nonsense_mediated_decay
  ENSMUST00000140647 Napb-003 148706418-148732391 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000028926ENSMUST00000136513ENSMUST00000140647
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000028926 N/A 0.339±0.18 N/A 29.829±21.80 N/A 0.317±0.17 0.311±0.23 0.500±0.24 0.077±0.03 0.744±0.00 N/A N/A N/A 0.172±0.06
ENSMUST00000136513 0.785±0.26 0.565±0.25 1.813±0.19 N/A 0.714±0.65 0.383±0.10 0.429±0.07 0.435±0.08 0.339±0.17 0.462±0.32 1.348±0.87 1.038±0.37 0.285±0.14 0.396±0.13
ENSMUST00000140647 0.186±0.03 0.268±0.10 N/A N/A 0.136±0.06 0.086±0.01 0.212±0.05 0.112±0.00 0.155±0.05 N/A N/A 0.252±0.09 N/A 0.141±0.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004MO CIL_0004MO_0003 CGP 2:148681023-148732467
CIL_00023K CIL_00023K_0002 CGP 2:148693985-148755433

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0006886 IEA intracellular protein transport
GO:0010807 IGI regulation of synaptic vesicle priming
GO:0019905 IDA syntaxin binding
GO:0035249 IGI synaptic transmission, glutamatergic
GO:0035494 IGI SNARE complex disassembly
GO:0070044 IDA synaptobrevin 2-SNAP-25-syntaxin-1a complex

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000013669 napba N-ethylmaleimide-sensitive factor attachment protein, beta a protein_coding Danio_rerio
ENSDARG00000069101 NAPB (2 of 2) N-ethylmaleimide-sensitive factor attachment protein, beta protein_coding Danio_rerio
ENSG00000125814 NAPB N-ethylmaleimide-sensitive factor attachment protein, beta protein_coding Homo_sapiens

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