C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: N-ethylmaleimide sensitive fusion protein attachment protein beta
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000028926 Napb-001 ENSMUSG00000027438 10090 - 2:148693985-148732467 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainColonHeartKidneyLiverLungTestisENSMUST00000028926
Transcript ID Adrenal Brain Colon Heart Kidney Liver Lung Testis
ENSMUST00000028926 0.339±0.18 29.829±21.80 0.317±0.17 0.311±0.23 0.500±0.24 0.077±0.03 0.744±0.00 0.172±0.06

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004MO CIL_0004MO_0003 CGP 2:148681023-148732467
CIL_00023K CIL_00023K_0002 CGP 2:148693985-148755433

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0006886 IEA intracellular protein transport
GO:0010807 IGI regulation of synaptic vesicle priming
GO:0019905 IDA syntaxin binding
GO:0035249 IGI synaptic transmission, glutamatergic
GO:0035494 IGI SNARE complex disassembly
GO:0070044 IDA synaptobrevin 2-SNAP-25-syntaxin-1a complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000018625 napa-001 protein_coding Danio_rerio 0 462
ENST00000377026 NAPB-001 protein_coding Homo_sapiens 0 1279
ENST00000398425 NAPB-201 protein_coding Homo_sapiens 0 782
ENST00000432543 NAPB-202 protein_coding Homo_sapiens 0 869
ENST00000468128 NAPB-004 processed_transcript Homo_sapiens 0 412
ENST00000472855 NAPB-002 processed_transcript Homo_sapiens 0 257
ENST00000487502 NAPB-003 processed_transcript Homo_sapiens 0 412
ENST00000617876 NAPB-203 protein_coding Homo_sapiens 0 1225

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