C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: p53 and DNA damage regulated 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000027472 Pdrg1 10090 - 2:153008890-153015427 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000028972 Pdrg1-001 153008890-153015427 protein_coding
  ENSMUST00000123083 Pdrg1-005 153012383-153015362 nonsense_mediated_decay
  ENSMUST00000124220 Pdrg1-004 153013351-153015377 retained_intron
  ENSMUST00000140325 Pdrg1-006 153014015-153015342 processed_transcript
  ENSMUST00000140853 Pdrg1-002 153010293-153015366 nonsense_mediated_decay
  ENSMUST00000150545 Pdrg1-003 153008890-153015427 nonsense_mediated_decay
  ENSMUST00000151392 Pdrg1-008 153009470-153012490 retained_intron
  ENSMUST00000152072 Pdrg1-007 153012213-153015346 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000028972ENSMUST00000123083ENSMUST00000150545ENSMUST00000151392ENSMUST00000152072
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000028972 43.140±6.07 42.577±7.24 42.534±6.86 35.352±17.48 34.874±11.23 15.227±3.75 62.691±2.44 29.100±7.44 17.977±4.99 29.039±3.12 49.999±3.76 34.629±8.77 20.453±4.78 7.525±3.41
ENSMUST00000123083 N/A N/A N/A 42.282±0.00 N/A N/A N/A N/A N/A N/A N/A 112.238±0.00 N/A N/A
ENSMUST00000150545 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.817±0.00
ENSMUST00000151392 N/A N/A N/A 11.947±0.00 N/A N/A N/A N/A N/A N/A N/A 36.145±6.48 N/A 5.434±0.00
ENSMUST00000152072 N/A N/A N/A 20.328±0.00 N/A N/A N/A N/A N/A N/A N/A 71.593±0.00 61.378±16.21 6.088±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008K5 CIL_0008K5_0002 VISTA 2:152434876-153035572
CIL_00089Z CIL_00089Z_0002 VISTA 2:152488201-153091382
CIL_0008N4 CIL_0008N4_0002 VISTA 2:152517372-153118197
CIL_0001KI CIL_0001KI_0002 CGP 2:152962485-153015427
CIL_0001KH CIL_0001KH_0002 CGP 2:153008890-153055775

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0005737 IEA cytoplasm
GO:0006457 IEA protein folding
GO:0008150 ND biological_process
GO:0016272 IEA prefoldin complex
GO:0051082 IEA unfolded protein binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000045017 pdrg1 p53 and DNA-damage regulated 1 protein_coding Danio_rerio
ENSG00000088356 PDRG1 p53 and DNA-damage regulated 1 protein_coding Homo_sapiens

Loading