C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: cerebral cavernous malformation 2-like
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000027474 Ccm2l 10090 + 2:153065955-153081735 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000109800 Ccm2l-002 153066002-153081735 protein_coding
  ENSMUST00000127549 Ccm2l-003 153065984-153071143 processed_transcript
  ENSMUST00000127898 Ccm2l-001 153065955-153081735 processed_transcript
  ENSMUST00000129377 Ccm2l-004 153065998-153070950 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000109800ENSMUST00000127549ENSMUST00000127898
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000109800 1.333±0.00 3.556±0.80 1.308±0.37 0.676±0.11 2.771±0.01 1.003±0.00 N/A 1.721±0.00 0.665±0.00 14.665±3.70 N/A 2.466±1.26 3.428±0.00 0.079±0.01
ENSMUST00000127549 5.001±0.44 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.590±2.27 N/A 0.499±0.20
ENSMUST00000127898 16.291±10.23 5.967±2.38 4.042±0.00 0.839±0.25 3.850±0.85 1.391±0.43 3.704±1.26 3.450±2.26 0.775±0.35 31.190±10.91 1.608±0.51 3.487±1.27 0.527±0.17 0.100±0.05

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00089Z CIL_00089Z_0002 VISTA 2:152488201-153091382
CIL_0008N4 CIL_0008N4_0002 VISTA 2:152517372-153118197
CIL_0000C8 CIL_0000C8_0003 CGP 2:153031852-153081735
CIL_0004A2 CIL_0004A2_0002 CGP 2:153065955-153151441

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003209 IGI cardiac atrium morphogenesis
GO:0003222 IGI ventricular trabecula myocardium morphogenesis
GO:0005515 IPI protein binding
GO:0005575 ND cellular_component
GO:0032091 IDA negative regulation of protein binding
GO:0034111 IDA negative regulation of homotypic cell-cell adhesion
GO:0042060 IMP wound healing
GO:0055017 IGI cardiac muscle tissue growth
GO:0090271 IGI positive regulation of fibroblast growth factor production

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000063089 ccm2l cerebral cavernous malformation 2-like protein_coding Danio_rerio
ENSG00000101331 CCM2L cerebral cavernous malformation 2-like protein_coding Homo_sapiens

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