C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0004A2_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000101331-ENSG00000101336 CGP 9606 20:32010450-32101856
GeneTranscriptPositionBiotype
ENSG00000101331 (CCM2L)
cerebral cavernous malformation 2-like 		ENST00000262659 (CCM2L-001) 32010450-32032180 protein_coding
ENST00000452892 (CCM2L-003) 32019218-32032180 protein_coding
ENSG00000101336 (HCK)
HCK proto-oncogene, Src family tyrosine kinase 		ENST00000262651 (HCK-005) 32052242-32101849 nonsense_mediated_decay
ENST00000375852 (HCK-001) 32052261-32101856 protein_coding
ENST00000375862 (HCK-002) 32052197-32101519 protein_coding
ENST00000470092 (HCK-003) 32052288-32072589 retained_intron
ENST00000486475 (HCK-004) 32052242-32101660 nonsense_mediated_decay
ENST00000518730 (HCK-007) 32052261-32101519 protein_coding
ENST00000520553 (HCK-006) 32052242-32101856 protein_coding
ENST00000534862 (HCK-201) 32052188-32101852 protein_coding
ENST00000538448 (HCK-202) 32052188-32101852 protein_coding
ENSG00000226239 (RP1-310O13.7)
 ENST00000449519 (RP1-310O13.7-001) 32027753-32031575 antisense

Homo sapiens Ensembl (GRCh38)

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CIL_0004A2_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000027474-ENSMUSG00000003283 CGP 10090 2:153065955-153151441
GeneTranscriptPositionBiotype
ENSMUSG00000003283 (Hck)
hemopoietic cell kinase 		ENSMUST00000003370 (Hck-002) 153108468-153151441 protein_coding
ENSMUST00000109799 (Hck-001) 153108468-153151441 protein_coding
ENSMUST00000189688 (Hck-201) 153108468-153151439 protein_coding
ENSMUST00000191431 (Hck-202) 153108468-153151439 protein_coding
ENSMUSG00000027474 (Ccm2l)
cerebral cavernous malformation 2-like 		ENSMUST00000109800 (Ccm2l-002) 153066002-153081735 protein_coding
ENSMUST00000127549 (Ccm2l-003) 153065984-153071143 processed_transcript
ENSMUST00000127898 (Ccm2l-001) 153065955-153081735 processed_transcript
ENSMUST00000129377 (Ccm2l-004) 153065998-153070950 protein_coding

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004A2_0001ENSG00000101331ENST00000262659ENST00000452892ENSG00000101336ENST00000262651ENST00000375852ENST00000375862ENST00000470092ENST00000486475ENST00000518730ENST00000520553ENST00000534862ENST00000538448ENSG00000226239ENST00000449519CIL_0004A2_0002ENSMUSG00000003283ENSMUST00000003370ENSMUST00000109799ENSMUST00000189688ENSMUST00000191431ENSMUSG00000027474ENSMUST00000109800ENSMUST00000127549ENSMUST00000127898ENSMUST00000129377
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004A2_0001ENSG00000101331ENST00000262659ENST00000452892ENSG00000101336ENST00000262651ENST00000375852ENST00000375862ENST00000486475ENST00000518730ENST00000520553ENST00000534862ENSG00000226239ENST00000449519CIL_0004A2_0002ENSMUSG00000003283ENSMUST00000003370ENSMUST00000191431ENSMUSG00000027474ENSMUST00000109800ENSMUST00000127549ENSMUST00000127898
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000101331 ENST00000262659 N/A N/A 0.181±0.00 0.296±0.00 2.095±0.00 0.736±0.00 1.473±0.00 N/A N/A N/A 0.975±0.00 0.782±0.20 2.889±0.58 0.381±0.00
ENST00000452892 1.131±0.00 N/A N/A N/A 5.032±0.00 N/A 0.856±0.00 0.903±0.08 0.328±0.04 N/A 0.782±0.00 1.826±1.17 2.454±0.00 1.229±0.00
ENSG00000101336 ENST00000262651 N/A N/A N/A 0.747±0.00 0.540±0.00 N/A 0.077±0.00 N/A 0.413±0.00 N/A N/A N/A N/A 0.682±0.00
ENST00000375852 N/A N/A N/A N/A 1.980±0.00 0.771±0.00 3.728±0.00 0.329±0.00 1.519±0.00 2.761±0.00 0.461±0.00 0.880±0.49 9.594±5.52 N/A
ENST00000375862 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.178±0.00
ENST00000470092 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000486475 3.242±0.00 8.360±0.00 N/A 2.279±0.00 2.449±0.00 0.756±0.00 N/A N/A N/A 4.946±0.00 N/A N/A N/A 0.702±0.00
ENST00000518730 N/A N/A 0.117±0.00 1.967±0.00 N/A 1.030±0.00 N/A 2.853±0.00 1.039±0.00 3.612±1.13 N/A 1.350±0.32 3.651±0.00 0.807±0.00
ENST00000520553 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.864±0.00 10.484±7.39 N/A
ENST00000534862 4.269±0.00 14.502±0.00 N/A 1.914±0.67 1.775±0.00 0.753±0.00 0.381±0.00 0.869±0.00 1.493±0.00 16.464±0.00 N/A 4.157±0.00 3.029±0.00 1.757±0.00
ENST00000538448 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000226239 ENST00000449519 1.579±0.00 3.156±0.00 N/A 0.605±0.00 0.628±0.44 0.505±0.00 0.501±0.32 0.752±0.00 0.222±0.09 0.864±0.00 0.399±0.00 0.564±0.23 2.141±0.00 0.954±0.07
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000003283 ENSMUST00000003370 3.939±2.04 0.935±0.27 0.697±0.00 0.422±0.00 7.587±2.20 3.515±0.23 0.192±0.10 0.343±0.09 2.694±3.60 15.583±3.27 0.085±0.13 2.634±2.08 0.203±0.16 0.066±0.03
ENSMUST00000109799 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000189688 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000191431 N/A 0.937±0.27 1.494±0.13 0.345±0.11 5.471±3.97 4.473±1.42 0.438±0.16 1.301±0.52 3.197±3.10 9.839±7.05 0.086±0.13 1.997±1.02 0.328±0.23 0.066±0.03
ENSMUSG00000027474 ENSMUST00000109800 1.333±0.00 3.556±0.80 1.308±0.37 0.676±0.11 2.771±0.01 1.003±0.00 N/A 1.721±0.00 0.665±0.00 14.665±3.70 N/A 2.466±1.26 3.428±0.00 0.079±0.01
ENSMUST00000127549 5.001±0.44 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.590±2.27 N/A 0.499±0.20
ENSMUST00000127898 16.291±10.23 5.967±2.38 4.042±0.00 0.839±0.25 3.850±0.85 1.391±0.43 3.704±1.26 3.450±2.26 0.775±0.35 31.190±10.91 1.608±0.51 3.487±1.27 0.527±0.17 0.100±0.05
ENSMUST00000129377 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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