C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sorting nexin 16
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000029047 Snx16-201 ENSMUSG00000027534 10090 - 3:10417819-10440124 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000029047
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000029047 1.281±0.53 1.203±0.39 2.161±0.31 5.344±1.88 0.717±0.50 0.812±0.31 0.750±0.11 0.990±0.19 0.770±0.37 0.926±0.35 1.142±0.31 1.348±0.42 1.412±0.44 0.416±0.15

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00071W CIL_00071W_0002 CGP 3:10366907-10440124

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005764 IEA lysosome
GO:0005769 ISS early endosome
GO:0005770 ISS late endosome
GO:0006622 ISS protein targeting to lysosome
GO:0008333 ISS endosome to lysosome transport
GO:0031313 ISS extrinsic component of endosome membrane
GO:0035091 ISS phosphatidylinositol binding
GO:0042802 IEA identical protein binding
GO:0045022 ISS early endosome to late endosome transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000345957 SNX16-001 protein_coding Homo_sapiens 0 1182
ENST00000353788 SNX16-002 protein_coding Homo_sapiens 0 627
ENST00000396330 SNX16-201 protein_coding Homo_sapiens 0 1177
ENST00000519212 SNX16-009 retained_intron Homo_sapiens 0 202
ENST00000521810 SNX16-003 protein_coding Homo_sapiens 0 758
ENST00000523757 SNX16-006 protein_coding Homo_sapiens 0 459
ENST00000615066 SNX16-202 protein_coding Homo_sapiens 0 1164

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