C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ATPase, class II, type 9A
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000027546 Atp9a 10090 - 2:168634438-168742409 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000029060 Atp9a-201 168634438-168741800 protein_coding
  ENSMUST00000109175 Atp9a-003 168634438-168734339 protein_coding
  ENSMUST00000109176 Atp9a-002 168634438-168741962 protein_coding
  ENSMUST00000109177 Atp9a-001 168634438-168742133 protein_coding
  ENSMUST00000123156 Atp9a-008 168705160-168712913 protein_coding
  ENSMUST00000140188 Atp9a-004 168667079-168741800 retained_intron
  ENSMUST00000147757 Atp9a-009 168662083-168670346 processed_transcript
  ENSMUST00000151610 Atp9a-006 168690985-168742375 protein_coding
  ENSMUST00000156397 Atp9a-005 168690993-168742409 protein_coding
  ENSMUST00000156555 Atp9a-007 168705227-168712962 protein_coding
  ENSMUST00000178504 Atp9a-202 168634463-168741964 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000029060ENSMUST00000109175ENSMUST00000109176ENSMUST00000109177ENSMUST00000178504
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000029060 18.195±4.63 20.610±5.20 8.880±0.87 68.726±22.73 12.814±4.61 17.971±0.00 4.442±0.89 5.810±2.03 4.553±2.95 13.801±5.48 2.573±1.11 12.354±6.70 7.898±3.40 12.762±8.51
ENSMUST00000109175 N/A N/A N/A N/A N/A 27.954±5.30 3.141±0.48 N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000109176 N/A 6.788±2.16 N/A N/A 7.506±0.00 N/A N/A N/A 0.353±0.01 7.300±0.25 N/A 8.711±1.67 N/A 7.458±2.56
ENSMUST00000109177 37.920±19.46 13.557±1.93 6.422±2.24 21.574±0.70 29.197±6.23 72.728±10.32 13.187±1.32 15.701±2.37 7.541±5.76 17.322±5.17 3.356±1.30 20.530±9.67 13.184±11.08 6.181±3.29
ENSMUST00000178504 5.323±0.00 N/A N/A N/A N/A 13.526±0.00 N/A 2.716±0.40 N/A N/A N/A 7.784±1.06 N/A 4.049±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007HZ CIL_0007HZ_0002 CGP 2:168476410-168742409
CIL_0007I5 CIL_0007I5_0002 CGP 2:168634438-168767943

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000287 IEA magnesium ion binding
GO:0004012 IEA phospholipid-translocating ATPase activity
GO:0005524 IEA ATP binding
GO:0005768 IEA endosome
GO:0005769 IEA early endosome
GO:0005794 IEA Golgi apparatus
GO:0005802 IEA trans-Golgi network
GO:0008152 IEA metabolic process
GO:0016021 IEA integral component of membrane
GO:0019829 IEA cation-transporting ATPase activity
GO:0045332 IEA phospholipid translocation
GO:0048471 IEA perinuclear region of cytoplasm
GO:0055037 IEA recycling endosome
GO:0098655 IEA cation transmembrane transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000088925 ATP9A ATPase, class II, type 9A protein_coding Danio_rerio
ENSG00000054793 ATP9A ATPase, class II, type 9A protein_coding Homo_sapiens

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