C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0007I5_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000054793-ENSG00000101115 CGP 9606 20:51596514-51802520
GeneTranscriptPositionBiotype
ENSG00000054793 (ATP9A)
ATPase, class II, type 9A 		ENST00000311637 (ATP9A-001) 51596514-51768328 protein_coding
ENST00000338821 (ATP9A-003) 51596514-51768634 protein_coding
ENST00000477492 (ATP9A-002) 51725819-51732587 processed_transcript
ENSG00000101115 (SALL4)
spalt-like transcription factor 4 		ENST00000217086 (SALL4-001) 51784042-51802520 protein_coding
ENST00000371539 (SALL4-201) 51784046-51802509 protein_coding
ENST00000395997 (SALL4-002) 51784265-51802475 protein_coding
ENST00000481363 (SALL4-004) 51792068-51793078 processed_transcript
ENST00000483130 (SALL4-003) 51791983-51801586 processed_transcript
ENSG00000215444 (RP5-827A12.2)
 ENST00000400354 (RP5-827A12.2-001) 51734533-51735067 processed_pseudogene
ENSG00000275370 (AL138807.1)
 ENST00000611310 (AL138807.1-201) 51717854-51717962 miRNA

Homo sapiens Ensembl (GRCh38)

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11
CIL_0007I5_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000027546-ENSMUSG00000027547 CGP 10090 2:168634438-168767943
GeneTranscriptPositionBiotype
ENSMUSG00000027546 (Atp9a)
ATPase, class II, type 9A 		ENSMUST00000029060 (Atp9a-201) 168634438-168741800 protein_coding
ENSMUST00000109175 (Atp9a-003) 168634438-168734339 protein_coding
ENSMUST00000109176 (Atp9a-002) 168634438-168741962 protein_coding
ENSMUST00000109177 (Atp9a-001) 168634438-168742133 protein_coding
ENSMUST00000123156 (Atp9a-008) 168705160-168712913 protein_coding
ENSMUST00000140188 (Atp9a-004) 168667079-168741800 retained_intron
ENSMUST00000147757 (Atp9a-009) 168662083-168670346 processed_transcript
ENSMUST00000151610 (Atp9a-006) 168690985-168742375 protein_coding
ENSMUST00000156397 (Atp9a-005) 168690993-168742409 protein_coding
ENSMUST00000156555 (Atp9a-007) 168705227-168712962 protein_coding
ENSMUST00000178504 (Atp9a-202) 168634463-168741964 protein_coding
ENSMUSG00000027547 (Sall4)
sal-like 4 (Drosophila) 		ENSMUST00000029061 (Sall4-001) 168748332-168767201 protein_coding
ENSMUST00000075044 (Sall4-005) 168748332-168767029 protein_coding
ENSMUST00000103074 (Sall4-002) 168748332-168767201 protein_coding
ENSMUST00000125138 (Sall4-007) 168756614-168767943 processed_transcript
ENSMUST00000130640 (Sall4-003) 168756753-168767117 processed_transcript
ENSMUST00000137536 (Sall4-004) 168756181-168765246 protein_coding
ENSMUST00000150588 (Sall4-006) 168754915-168755943 protein_coding
ENSMUSG00000085322 (Gm14261)
predicted gene 14261 		ENSMUST00000145105 (Gm14261-001) 168766143-168768108 processed_transcript

Mus musculus Ensembl (GRCm38)

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007I5_0001ENSG00000054793ENST00000311637ENST00000338821ENST00000477492ENSG00000101115ENST00000217086ENST00000371539ENST00000395997ENST00000481363ENST00000483130ENSG00000215444ENST00000400354ENSG00000275370ENST00000611310CIL_0007I5_0002ENSMUSG00000027546ENSMUST00000029060ENSMUST00000109175ENSMUST00000109176ENSMUST00000109177ENSMUST00000123156ENSMUST00000140188ENSMUST00000147757ENSMUST00000151610ENSMUST00000156397ENSMUST00000156555ENSMUST00000178504ENSMUSG00000027547ENSMUST00000029061ENSMUST00000075044ENSMUST00000103074ENSMUST00000125138ENSMUST00000130640ENSMUST00000137536ENSMUST00000150588ENSMUSG00000085322ENSMUST00000145105
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007I5_0001ENSG00000054793ENST00000311637ENST00000338821ENSG00000101115ENST00000217086ENST00000371539ENST00000395997ENST00000481363ENSG00000215444ENST00000400354ENSG00000275370ENST00000611310CIL_0007I5_0002ENSMUSG00000027546ENSMUST00000029060ENSMUST00000109175ENSMUST00000109176ENSMUST00000109177ENSMUST00000178504ENSMUSG00000027547ENSMUST00000029061ENSMUST00000075044ENSMUST00000103074ENSMUST00000125138ENSMUST00000137536ENSMUST00000150588ENSMUSG00000085322ENSMUST00000145105
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000054793 ENST00000311637 8.158±0.00 1.934±0.00 N/A 32.926±0.00 16.829±0.00 7.397±0.00 1.884±0.00 5.534±0.00 1.438±0.00 0.948±0.00 1.736±0.41 5.089±0.92 0.530±0.17 7.661±2.97
ENST00000338821 10.248±0.00 3.555±0.00 0.380±0.00 27.432±5.42 14.238±5.10 7.254±1.30 4.144±0.00 3.041±0.00 2.481±1.35 4.757±2.10 2.624±0.65 7.233±4.84 1.428±0.20 8.439±1.93
ENST00000477492 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000101115 ENST00000217086 0.009±0.00 0.087±0.00 N/A 0.073±0.05 0.047±0.00 N/A 0.011±0.01 0.175±0.10 N/A N/A N/A 0.395±0.33 0.031±0.00 1.071±0.39
ENST00000371539 N/A 0.073±0.00 0.051±0.00 N/A 0.603±0.00 0.042±0.00 N/A N/A N/A 0.134±0.00 N/A 0.918±0.00 0.077±0.00 N/A
ENST00000395997 0.041±0.00 N/A N/A N/A N/A 0.013±0.00 N/A N/A N/A 0.029±0.00 N/A N/A 0.076±0.00 N/A
ENST00000481363 N/A N/A N/A N/A 0.026±0.00 0.266±0.00 N/A N/A N/A 0.143±0.00 N/A N/A N/A N/A
ENST00000483130 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000215444 ENST00000400354 N/A 0.040±0.00 N/A 0.834±0.00 N/A 0.101±0.00 0.070±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSG00000275370 ENST00000611310 1.535±0.00 2.750±0.00 N/A 2.157±0.00 0.598±0.00 2.644±0.00 1.059±0.00 N/A 1.073±0.00 2.374±0.00 N/A N/A N/A 1.260±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000027546 ENSMUST00000029060 18.195±4.63 20.610±5.20 8.880±0.87 68.726±22.73 12.814±4.61 17.971±0.00 4.442±0.89 5.810±2.03 4.553±2.95 13.801±5.48 2.573±1.11 12.354±6.70 7.898±3.40 12.762±8.51
ENSMUST00000109175 N/A N/A N/A N/A N/A 27.954±5.30 3.141±0.48 N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000109176 N/A 6.788±2.16 N/A N/A 7.506±0.00 N/A N/A N/A 0.353±0.01 7.300±0.25 N/A 8.711±1.67 N/A 7.458±2.56
ENSMUST00000109177 37.920±19.46 13.557±1.93 6.422±2.24 21.574±0.70 29.197±6.23 72.728±10.32 13.187±1.32 15.701±2.37 7.541±5.76 17.322±5.17 3.356±1.30 20.530±9.67 13.184±11.08 6.181±3.29
ENSMUST00000123156 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000140188 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000147757 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000151610 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000156397 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000156555 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000178504 5.323±0.00 N/A N/A N/A N/A 13.526±0.00 N/A 2.716±0.40 N/A N/A N/A 7.784±1.06 N/A 4.049±0.00
ENSMUSG00000027547 ENSMUST00000029061 N/A N/A N/A 0.160±0.00 0.013±0.00 0.041±0.02 N/A N/A 0.612±0.25 0.006±0.00 N/A 0.627±0.43 1.072±1.02 0.015±0.00
ENSMUST00000075044 0.014±0.00 0.023±0.00 N/A 0.052±0.05 0.053±0.03 0.035±0.01 N/A 0.014±0.00 N/A N/A 0.240±0.00 0.134±0.00 0.270±0.02 0.021±0.00
ENSMUST00000103074 N/A 0.027±0.00 N/A N/A 0.047±0.00 N/A N/A N/A 0.275±0.03 N/A N/A 0.217±0.17 0.315±0.10 N/A
ENSMUST00000125138 N/A 0.388±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000130640 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000137536 N/A N/A N/A 0.066±0.00 0.093±0.00 0.043±0.00 N/A N/A N/A N/A N/A 0.208±0.00 2.330±0.00 N/A
ENSMUST00000150588 N/A N/A N/A N/A 0.566±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000085322 ENSMUST00000145105 0.031±0.00 N/A 0.079±0.00 N/A 0.182±0.07 N/A 1.045±0.30 0.082±0.00 N/A N/A 2.210±0.62 N/A N/A N/A

Loading