C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: SAM domain and HD domain, 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000027639 Samhd1 10090 - 2:157097533-157135265 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000057725 Samhd1-001 157097533-157135265 protein_coding
  ENSMUST00000088523 Samhd1-201 157101360-157135222 protein_coding
  ENSMUST00000109549 Samhd1-002 157103345-157135206 protein_coding
  ENSMUST00000123932 Samhd1-003 157099401-157135093 nonsense_mediated_decay
  ENSMUST00000139149 Samhd1-008 157107512-157110040 retained_intron
  ENSMUST00000139263 Samhd1-005 157099401-157135120 protein_coding
  ENSMUST00000142508 Samhd1-007 157109124-157110611 retained_intron
  ENSMUST00000149313 Samhd1-004 157119564-157134937 retained_intron
  ENSMUST00000152866 Samhd1-006 157121847-157130057 retained_intron
  ENSMUST00000160213 Samhd1-009 157101694-157110612 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000057725ENSMUST00000088523ENSMUST00000109549ENSMUST00000123932ENSMUST00000139263ENSMUST00000160213
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000057725 5.947±1.17 2.677±1.25 11.618±3.07 2.299±0.91 9.251±4.60 4.051±1.04 2.062±0.35 2.618±0.94 4.176±2.90 14.494±4.04 3.130±0.73 7.545±2.10 5.574±2.53 1.194±0.63
ENSMUST00000088523 N/A N/A N/A N/A N/A 8.654±0.00 N/A N/A N/A N/A N/A N/A N/A 0.793±0.00
ENSMUST00000109549 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.920±0.00 N/A
ENSMUST00000123932 N/A N/A 3.497±0.00 1.186±0.00 N/A N/A N/A N/A 2.282±0.48 N/A N/A 5.202±0.00 2.562±0.60 0.440±0.09
ENSMUST00000139263 5.825±0.00 N/A 5.709±0.24 N/A N/A 7.816±1.79 N/A N/A 3.617±0.48 N/A 2.674±0.62 13.102±0.43 6.110±2.62 1.257±0.00
ENSMUST00000160213 N/A N/A N/A 13.145±0.00 N/A N/A N/A N/A N/A N/A N/A 60.838±0.00 66.595±11.32 9.354±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004XX CIL_0004XX_0002 CGP 2:157087055-157135265
CIL_0004ZW CIL_0004ZW_0002 CGP 2:157097533-157204534

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003676 ISS nucleic acid binding
GO:0003723 ISS RNA binding
GO:0005634 ISS nucleus
GO:0005886 IEA plasma membrane
GO:0006203 ISS dGTP catabolic process
GO:0008270 ISS zinc ion binding
GO:0008832 ISS dGTPase activity
GO:0032567 ISS dGTP binding
GO:0045087 IEA innate immune response
GO:0045088 ISS regulation of innate immune response
GO:0046061 ISS dATP catabolic process
GO:0051289 IEA protein homotetramerization
GO:0051607 ISS defense response to virus

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000071288 samhd1 SAM domain and HD domain 1 protein_coding Danio_rerio
ENSG00000101347 SAMHD1 SAM domain and HD domain 1 protein_coding Homo_sapiens

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