C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0004ZW_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000101347-ENSG00000080839 CGP 9606 20:36890229-37095995
GeneTranscriptPositionBiotype
ENSG00000080839 (RBL1)
retinoblastoma-like 1 		ENST00000344359 (RBL1-002) 37003574-37095989 protein_coding
ENST00000373664 (RBL1-001) 36996349-37095995 protein_coding
ENST00000525052 (RBL1-004) 37056160-37068055 protein_coding
ENST00000527999 (RBL1-003) 37068087-37095995 nonsense_mediated_decay
ENSG00000101342 (TLDC2)
TBC/LysM-associated domain containing 2 		ENST00000217320 (TLDC2-003) 36876131-36894235 protein_coding
ENST00000436941 (TLDC2-001) 36887455-36894235 protein_coding
ENST00000602922 (TLDC2-004) 36876121-36889863 protein_coding
ENSG00000101347 (SAMHD1)
SAM domain and HD domain 1 		ENST00000262878 (SAMHD1-001) 36890229-36951843 protein_coding
ENST00000465985 (SAMHD1-002) 36897568-36905394 retained_intron
ENSG00000226144 (RPS27AP3)
ribosomal protein S27a pseudogene 3 		ENST00000453803 (RPS27AP3-001) 37049254-37049707 processed_pseudogene
ENSG00000231241 (RPS3AP3)
ribosomal protein S3A pseudogene 3 		ENST00000411933 (RPS3AP3-001) 37021743-37021984 processed_pseudogene
CIL_0004ZW_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000027639-ENSMUSG00000027641 CGP 10090 2:157097533-157204534
GeneTranscriptPositionBiotype
ENSMUSG00000027639 (Samhd1)
SAM domain and HD domain, 1 		ENSMUST00000057725 (Samhd1-001) 157097533-157135265 protein_coding
ENSMUST00000088523 (Samhd1-201) 157101360-157135222 protein_coding
ENSMUST00000109549 (Samhd1-002) 157103345-157135206 protein_coding
ENSMUST00000123932 (Samhd1-003) 157099401-157135093 nonsense_mediated_decay
ENSMUST00000139149 (Samhd1-008) 157107512-157110040 retained_intron
ENSMUST00000139263 (Samhd1-005) 157099401-157135120 protein_coding
ENSMUST00000142508 (Samhd1-007) 157109124-157110611 retained_intron
ENSMUST00000149313 (Samhd1-004) 157119564-157134937 retained_intron
ENSMUST00000152866 (Samhd1-006) 157121847-157130057 retained_intron
ENSMUST00000160213 (Samhd1-009) 157101694-157110612 retained_intron
ENSMUSG00000027641 (Rbl1)
retinoblastoma-like 1 (p107) 		ENSMUST00000029170 (Rbl1-001) 157145893-157204512 protein_coding
ENSMUST00000124518 (Rbl1-002) 157174986-157204526 retained_intron
ENSMUST00000141296 (Rbl1-004) 157188263-157192383 retained_intron
ENSMUST00000154721 (Rbl1-003) 157166978-157204534 retained_intron
ENSMUSG00000084113 (Gm14277)
predicted gene 14277 		ENSMUST00000121195 (Gm14277-001) 157168820-157169179 processed_pseudogene

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004ZW_0001ENSG00000080839ENST00000344359ENST00000373664ENST00000525052ENST00000527999ENSG00000101342ENST00000217320ENST00000436941ENST00000602922ENSG00000101347ENST00000262878ENST00000465985ENSG00000226144ENST00000453803ENSG00000231241ENST00000411933CIL_0004ZW_0002ENSMUSG00000027639ENSMUST00000057725ENSMUST00000088523ENSMUST00000109549ENSMUST00000123932ENSMUST00000139149ENSMUST00000139263ENSMUST00000142508ENSMUST00000149313ENSMUST00000152866ENSMUST00000160213ENSMUSG00000027641ENSMUST00000029170ENSMUST00000124518ENSMUST00000141296ENSMUST00000154721ENSMUSG00000084113ENSMUST00000121195
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004ZW_0001ENSG00000080839ENST00000344359ENST00000373664ENST00000525052ENSG00000101342ENST00000217320ENSG00000101347ENST00000262878ENSG00000226144ENST00000453803ENSG00000231241ENST00000411933CIL_0004ZW_0002ENSMUSG00000027639ENSMUST00000057725ENSMUST00000088523ENSMUST00000109549ENSMUST00000123932ENSMUST00000139263ENSMUST00000160213ENSMUSG00000027641ENSMUST00000029170ENSMUST00000124518ENSMUST00000154721ENSMUSG00000084113ENSMUST00000121195
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000080839 ENST00000344359 0.600±0.00 N/A 0.514±0.00 0.504±0.00 1.797±0.00 0.704±0.06 0.673±0.00 N/A 1.217±0.00 1.972±0.00 N/A 3.445±0.00 0.529±0.00 N/A
ENST00000373664 N/A 0.168±0.00 0.048±0.00 0.360±0.00 0.542±0.06 0.103±0.00 0.687±0.00 0.499±0.08 0.099±0.00 0.376±0.05 1.593±0.00 1.536±0.74 0.648±0.28 1.110±0.70
ENST00000525052 N/A N/A 0.355±0.00 N/A 4.505±0.00 N/A N/A 0.821±0.00 1.670±0.00 N/A 1.096±0.00 6.175±0.00 N/A N/A
ENST00000527999 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000101342 ENST00000217320 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 11.331±0.00 N/A N/A
ENST00000436941 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000602922 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000101347 ENST00000262878 34.771±0.00 26.649±0.00 1.085±0.00 5.326±3.08 16.872±0.18 30.275±25.06 12.168±9.44 13.547±9.92 6.843±1.71 13.521±2.62 3.536±2.46 16.636±4.47 17.129±2.17 16.638±10.63
ENST00000465985 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000226144 ENST00000453803 0.115±0.00 N/A N/A 0.118±0.00 N/A 0.028±0.00 N/A N/A N/A 0.028±0.00 N/A 0.054±0.00 N/A N/A
ENSG00000231241 ENST00000411933 N/A N/A N/A N/A 3.170±0.00 N/A N/A N/A N/A N/A N/A 0.323±0.01 N/A 0.143±0.10
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000027639 ENSMUST00000057725 5.947±1.17 2.677±1.25 11.618±3.07 2.299±0.91 9.251±4.60 4.051±1.04 2.062±0.35 2.618±0.94 4.176±2.90 14.494±4.04 3.130±0.73 7.545±2.10 5.574±2.53 1.194±0.63
ENSMUST00000088523 N/A N/A N/A N/A N/A 8.654±0.00 N/A N/A N/A N/A N/A N/A N/A 0.793±0.00
ENSMUST00000109549 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.920±0.00 N/A
ENSMUST00000123932 N/A N/A 3.497±0.00 1.186±0.00 N/A N/A N/A N/A 2.282±0.48 N/A N/A 5.202±0.00 2.562±0.60 0.440±0.09
ENSMUST00000139149 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000139263 5.825±0.00 N/A 5.709±0.24 N/A N/A 7.816±1.79 N/A N/A 3.617±0.48 N/A 2.674±0.62 13.102±0.43 6.110±2.62 1.257±0.00
ENSMUST00000142508 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000149313 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000152866 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000160213 N/A N/A N/A 13.145±0.00 N/A N/A N/A N/A N/A N/A N/A 60.838±0.00 66.595±11.32 9.354±0.00
ENSMUSG00000027641 ENSMUST00000029170 2.905±1.28 1.928±0.28 2.267±0.12 4.875±0.17 3.041±1.29 5.469±1.05 0.496±0.08 1.952±0.32 5.497±5.68 3.722±0.69 0.326±0.13 3.966±1.28 3.672±1.41 4.610±1.93
ENSMUST00000124518 N/A 1.458±0.25 N/A 0.246±0.00 1.704±0.00 2.616±0.48 N/A N/A N/A 1.054±0.00 0.209±0.06 1.728±0.63 N/A 2.252±0.00
ENSMUST00000141296 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000154721 0.470±0.00 N/A N/A 0.056±0.00 0.508±0.00 1.628±0.00 0.178±0.00 0.592±0.00 N/A N/A 0.325±0.00 1.312±0.29 N/A N/A
ENSMUSG00000084113 ENSMUST00000121195 N/A N/A 0.091±0.01 0.155±0.05 0.450±0.00 N/A 0.161±0.00 N/A 0.341±0.15 N/A N/A 0.166±0.05 0.176±0.07 0.741±0.33

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