C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: regulation of nuclear pre-mRNA domain containing 1B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000029180 Rprd1b-004 ENSMUSG00000027651 10090 + 2:158028721-158078207 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainLiverMuscleOvaryTestisENSMUST00000029180
Transcript ID Adrenal Brain Liver Muscle Ovary Testis
ENSMUST00000029180 15.398±2.59 1.793±0.10 10.881±0.00 5.228±0.86 5.281±0.51 0.277±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004NX CIL_0004NX_0002 CGP 2:157981803-158132297
CIL_0004NY CIL_0004NY_0002 CGP 2:158028497-158146436

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000993 ISS RNA polymerase II core binding
GO:0005515 IEA protein binding
GO:0005634 ISS nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0008284 ISS positive regulation of cell proliferation
GO:0010564 ISS regulation of cell cycle process
GO:0016591 ISS DNA-directed RNA polymerase II, holoenzyme
GO:0045944 ISS positive regulation of transcription from RNA polymerase II promoter
GO:0070940 ISS dephosphorylation of RNA polymerase II C-terminal domain

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000373433 RPRD1B-001 protein_coding Homo_sapiens 0 1572
ENST00000449186 RPRD1B-004 protein_coding Homo_sapiens 0 664
ENST00000462548 RPRD1B-003 nonsense_mediated_decay Homo_sapiens 0 1037
ENST00000471511 RPRD1B-005 processed_transcript Homo_sapiens 0 261
ENST00000495457 RPRD1B-002 nonsense_mediated_decay Homo_sapiens 0 470
ENST00000614670 RPRD1B-009 protein_coding Homo_sapiens 0 255
ENST00000618318 RPRD1B-008 processed_transcript Homo_sapiens 0 265

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