C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: methylcrotonoyl-Coenzyme A carboxylase 1 (alpha)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000027709 Mccc1 10090 - 3:35959312-36000678 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000029259 Mccc1-001 35959839-36000678 protein_coding
  ENSMUST00000131161 Mccc1-006 35975796-35989932 nonsense_mediated_decay
  ENSMUST00000132823 Mccc1-007 35975193-35976587 retained_intron
  ENSMUST00000140010 Mccc1-005 35984986-36000641 nonsense_mediated_decay
  ENSMUST00000144266 Mccc1-002 35959312-36000609 nonsense_mediated_decay
  ENSMUST00000148922 Mccc1-003 35973890-35995879 retained_intron
  ENSMUST00000149693 Mccc1-008 35959839-35961109 retained_intron
  ENSMUST00000151716 Mccc1-004 35961727-35969111 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000029259ENSMUST00000131161ENSMUST00000140010ENSMUST00000144266ENSMUST00000148922ENSMUST00000151716
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000029259 19.111±4.61 N/A 7.116±0.54 5.193±2.09 9.919±2.80 2.000±0.65 14.046±1.26 22.710±5.18 7.135±1.85 1.667±0.08 10.470±1.03 5.935±5.58 5.379±2.11 1.660±0.25
ENSMUST00000131161 N/A N/A N/A 30.119±0.00 N/A N/A N/A N/A N/A N/A N/A 48.103±0.00 16.210±2.33 N/A
ENSMUST00000140010 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 26.743±0.00 11.964±0.00 N/A
ENSMUST00000144266 6.942±1.11 8.673±2.44 1.176±0.00 N/A 7.185±2.17 2.480±1.00 5.655±1.80 12.445±1.35 3.290±2.92 2.063±1.00 N/A 5.823±1.72 N/A 1.425±0.00
ENSMUST00000148922 10.179±3.60 28.446±7.01 N/A N/A 20.665±5.12 4.461±1.19 9.828±1.86 13.148±0.57 6.103±1.66 4.376±0.18 N/A 7.216±1.34 1.841±0.00 N/A
ENSMUST00000151716 N/A N/A 0.454±0.00 0.678±0.00 N/A N/A N/A N/A N/A 0.536±0.00 N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00090H CIL_00090H_0002 VISTA 3:35858852-36462657
CIL_0005FZ CIL_0005FZ_0002 CGP 3:35892105-36000678

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004075 IEA biotin carboxylase activity
GO:0004485 ISS methylcrotonoyl-CoA carboxylase activity
GO:0005515 IEA protein binding
GO:0005524 IEA ATP binding
GO:0005739 IDA mitochondrion
GO:0005743 IDA mitochondrial inner membrane
GO:0006552 IEA leucine catabolic process
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000054046 mccc1 methylcrotonoyl-Coenzyme A carboxylase 1 (alpha) protein_coding Danio_rerio
ENSG00000078070 MCCC1 methylcrotonoyl-CoA carboxylase 1 (alpha) protein_coding Homo_sapiens

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