C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: exosome component 9
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000029269 Exosc9-001 ENSMUSG00000027714 10090 + 3:36552606-36565729 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000029269
Transcript ID Adipose Bladder Brain Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000029269 1.576±0.65 8.347±2.51 12.451±3.39 1.479±0.46 1.188±0.41 0.964±0.32 2.698±0.00 6.741±0.41 12.447±0.56 12.442±5.08 6.775±2.81

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000KG CIL_0000KG_0002 CGP 3:36552606-36572150

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000178 ISS exosome (RNase complex)
GO:0000956 IEA nuclear-transcribed mRNA catabolic process
GO:0004527 IEA exonuclease activity
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005730 TAS nucleolus
GO:0005737 IEA cytoplasm
GO:0006364 IEA rRNA processing
GO:0017091 IEA AU-rich element binding
GO:0030307 IEA positive regulation of cell growth
GO:0043928 IEA exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay
GO:0044822 IEA poly(A) RNA binding
GO:0045111 IEA intermediate filament cytoskeleton
GO:0071028 IEA nuclear mRNA surveillance
GO:0071035 IEA nuclear polyadenylation-dependent rRNA catabolic process
GO:0090305 IEA nucleic acid phosphodiester bond hydrolysis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000243498 EXOSC9-001 protein_coding Homo_sapiens 0 1567
ENST00000379663 EXOSC9-003 protein_coding Homo_sapiens 0 1430
ENST00000503139 EXOSC9-006 processed_transcript Homo_sapiens 0 429
ENST00000503236 EXOSC9-012 processed_transcript Homo_sapiens 0 259
ENST00000506201 EXOSC9-010 retained_intron Homo_sapiens 0 313
ENST00000508212 EXOSC9-009 processed_transcript Homo_sapiens 0 525
ENST00000509800 EXOSC9-008 protein_coding Homo_sapiens 0 490
ENST00000509980 EXOSC9-002 processed_transcript Homo_sapiens 0 1430
ENST00000511132 EXOSC9-011 protein_coding Homo_sapiens 0 427
ENST00000511454 EXOSC9-007 nonsense_mediated_decay Homo_sapiens 0 566
ENST00000512454 EXOSC9-005 protein_coding Homo_sapiens 0 1507
ENST00000513654 EXOSC9-004 nonsense_mediated_decay Homo_sapiens 0 1293

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