C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: SMAD family member 9
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000027796 Smad9 10090 + 3:54755582-54801257 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000029371 Smad9-001 54755582-54801257 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000029371
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000029371 0.304±0.12 12.079±4.94 3.853±0.30 0.661±0.57 0.262±0.08 1.031±0.23 0.437±0.03 0.591±0.17 1.521±1.20 3.033±0.19 0.047±0.02 1.600±0.37 0.897±1.04 0.188±0.13

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001657 IEP ureteric bud development
GO:0001666 IEA response to hypoxia
GO:0001880 IEA Mullerian duct regression
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005667 IEA transcription factor complex
GO:0005737 IDA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006468 IDA protein phosphorylation
GO:0007179 IEA transforming growth factor beta receptor signaling pathway
GO:0030509 IDA BMP signaling pathway
GO:0030901 IMP midbrain development
GO:0030902 IMP hindbrain development
GO:0045597 IEA positive regulation of cell differentiation
GO:0045893 IEA positive regulation of transcription, DNA-templated
GO:0046872 IEA metal ion binding
GO:0051216 IGI cartilage development
GO:0060348 IGI bone development
GO:0071407 IDA cellular response to organic cyclic compound

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000021938 smad9 MAD homolog 9 (Drosophila) protein_coding Danio_rerio
ENSG00000120693 SMAD9 SMAD family member 9 protein_coding Homo_sapiens

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