C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SMAD family member 9
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000029371 Smad9-001 ENSMUSG00000027796 10090 + 3:54755582-54801257 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000029371
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000029371 0.304±0.12 12.079±4.94 3.853±0.30 0.661±0.57 0.262±0.08 1.031±0.23 0.437±0.03 0.591±0.17 1.521±1.20 3.033±0.19 0.047±0.02 1.600±0.37 0.897±1.04 0.188±0.13

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001657 IEP ureteric bud development
GO:0001666 IEA response to hypoxia
GO:0001880 IEA Mullerian duct regression
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005667 IEA transcription factor complex
GO:0005737 IDA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006468 IDA protein phosphorylation
GO:0007179 IEA transforming growth factor beta receptor signaling pathway
GO:0030509 IDA BMP signaling pathway
GO:0030901 IMP midbrain development
GO:0030902 IMP hindbrain development
GO:0045597 IEA positive regulation of cell differentiation
GO:0045893 IEA positive regulation of transcription, DNA-templated
GO:0046872 IEA metal ion binding
GO:0051216 IGI cartilage development
GO:0060348 IGI bone development
GO:0071407 IDA cellular response to organic cyclic compound

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000129079 smad5-201 protein_coding Danio_rerio 0 335
ENSDART00000054175 smad5-001 protein_coding Danio_rerio 0 335
ENSDART00000145625 smad5-002 protein_coding Danio_rerio 0 289
ENST00000187762 TMEM38A-001 protein_coding Homo_sapiens 0.0000000000002 82
ENST00000302085 SMAD1-001 protein_coding Homo_sapiens 0 346
ENST00000350148 SMAD9-001 protein_coding Homo_sapiens 0 1476
ENST00000379826 SMAD9-201 protein_coding Homo_sapiens 0 756
ENST00000394092 SMAD1-015 protein_coding Homo_sapiens 0 346
ENST00000399275 SMAD9-002 protein_coding Homo_sapiens 0 756
ENST00000483941 SMAD9-003 processed_transcript Homo_sapiens 0 289
ENST00000511125 SMAD1-014 retained_intron Homo_sapiens 0 346
ENST00000515385 SMAD1-002 protein_coding Homo_sapiens 0 346

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