C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: chloride channel CLIC-like 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000027884 Clcc1 10090 + 3:108653913-108678840 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000029483 Clcc1-201 108653940-108678840 protein_coding
  ENSMUST00000106609 Clcc1-002 108653913-108678840 protein_coding
  ENSMUST00000106613 Clcc1-001 108653990-108678012 protein_coding
  ENSMUST00000124384 Clcc1-003 108653958-108663544 protein_coding
  ENSMUST00000125274 Clcc1-005 108653949-108662995 processed_transcript
  ENSMUST00000130352 Clcc1-004 108653957-108668077 processed_transcript
  ENSMUST00000139016 Clcc1-006 108663385-108668827 processed_transcript
  ENSMUST00000156811 Clcc1-007 108661940-108673371 processed_transcript

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000029483ENSMUST00000106609ENSMUST00000106613ENSMUST00000124384ENSMUST00000139016
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000029483 N/A 1.907±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.812±0.00 N/A N/A
ENSMUST00000106609 9.037±2.60 5.096±1.77 15.256±2.22 8.587±1.24 6.384±2.09 7.231±1.76 11.186±3.16 13.623±6.31 13.308±4.18 10.994±0.66 9.946±1.34 10.610±5.20 11.178±1.76 4.189±1.81
ENSMUST00000106613 1.845±0.86 1.500±0.16 4.096±0.00 2.813±0.81 1.708±0.25 N/A N/A 2.484±0.00 2.305±0.69 1.809±0.02 1.231±0.12 3.477±0.88 N/A 1.251±0.00
ENSMUST00000124384 N/A 11.313±1.03 N/A N/A 18.545±3.47 18.664±1.64 N/A N/A 21.312±3.30 27.617±3.99 N/A 21.975±0.00 N/A N/A
ENSMUST00000139016 N/A N/A N/A 20.179±0.00 N/A N/A N/A N/A N/A N/A N/A 32.099±0.00 21.080±6.07 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00099A CIL_00099A_0002 VISTA 3:108089934-108692442
CIL_00098X CIL_00098X_0002 VISTA 3:108109603-108712500

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005254 IEA chloride channel activity
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0005783 IEA endoplasmic reticulum
GO:0005794 IEA Golgi apparatus
GO:0006821 IEA chloride transport
GO:0016020 IEA membrane
GO:0034707 IEA chloride channel complex
GO:0043231 IEA intracellular membrane-bounded organelle
GO:1902476 IEA chloride transmembrane transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000086174 CLCC1 chloride channel CLIC-like 1 protein_coding Danio_rerio
ENSG00000121940 CLCC1 chloride channel CLIC-like 1 protein_coding Homo_sapiens

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