C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: synaptophysin-like 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000027887 Sypl2 10090 - 3:108211472-108226648 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000029486 Sypl2-201 108212266-108226599 protein_coding
  ENSMUST00000141387 Sypl2-001 108211472-108226648 protein_coding
  ENSMUST00000156371 Sypl2-002 108217301-108226643 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000029486ENSMUST00000141387ENSMUST00000156371
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000029486 0.107±0.05 0.075±0.04 0.263±0.03 0.145±0.00 20.022±16.42 0.292±0.09 0.162±0.04 15.899±0.90 0.046±0.03 1.917±0.08 110.657±14.60 0.052±0.02 0.271±0.14 0.186±0.08
ENSMUST00000141387 0.102±0.01 0.070±0.01 0.053±0.00 0.045±0.00 N/A 0.201±0.08 0.077±0.04 N/A 0.008±0.00 0.041±0.01 N/A 0.057±0.02 0.180±0.00 0.099±0.07
ENSMUST00000156371 0.084±0.00 0.246±0.13 0.270±0.00 N/A 0.038±0.00 0.212±0.08 N/A 12.344±0.00 0.029±0.01 0.079±0.00 N/A 0.113±0.05 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00099A CIL_00099A_0002 VISTA 3:108089934-108692442
CIL_00098X CIL_00098X_0002 VISTA 3:108109603-108712500

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005215 IEA transporter activity
GO:0006810 IEA transport
GO:0006874 IMP cellular calcium ion homeostasis
GO:0021762 IEA substantia nigra development
GO:0030285 IBA integral component of synaptic vesicle membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000000690 sypl2b synaptophysin-like 2b protein_coding Danio_rerio
ENSDARG00000055307 sypl2a synaptophysin-like 2a protein_coding Danio_rerio
ENSG00000143028 SYPL2 synaptophysin-like 2 protein_coding Homo_sapiens

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