C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: synaptophysin-like 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000141387 Sypl2-001 ENSMUSG00000027887 10090 - 3:108211472-108226648 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainColonHeartLiverLungOvaryPlacentaTestisENSMUST00000141387
Transcript ID Adipose Adrenal Bladder Brain Colon Heart Liver Lung Ovary Placenta Testis
ENSMUST00000141387 0.102±0.01 0.070±0.01 0.053±0.00 0.045±0.00 0.201±0.08 0.077±0.04 0.008±0.00 0.041±0.01 0.057±0.02 0.180±0.00 0.099±0.07

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00099A CIL_00099A_0002 VISTA 3:108089934-108692442
CIL_00098X CIL_00098X_0002 VISTA 3:108109603-108712500

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005215 IEA transporter activity
GO:0006810 IEA transport
GO:0006874 IMP cellular calcium ion homeostasis
GO:0030285 IBA integral component of synaptic vesicle membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000369872 SYPL2-001 protein_coding Homo_sapiens 0 1092
ENST00000475497 SYPL2-002 processed_transcript Homo_sapiens 0 231

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