C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: DEAD (Asp-Glu-Ala-Asp) box polypeptide 20
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000027905 Ddx20 10090 - 3:105678270-105687574 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000090680 Ddx20-001 105678270-105687574 protein_coding
  ENSMUST00000132008 Ddx20-002 105681489-105687444 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000090680ENSMUST00000132008
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000090680 2.935±1.72 N/A 3.133±0.20 4.679±1.67 2.372±0.59 2.088±0.47 1.740±0.14 2.651±0.21 4.513±2.58 2.983±0.63 2.974±0.55 3.333±0.76 8.702±3.96 58.457±3.47
ENSMUST00000132008 2.080±1.69 30.479±12.83 N/A 1.178±0.08 9.447±8.24 5.153±3.28 0.406±0.04 1.419±1.58 1.776±0.85 6.490±7.15 N/A 30.429±20.09 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00075Y CIL_00075Y_0002 CGP 3:105452330-105687574

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0000387 ISS spliceosomal snRNP assembly
GO:0003677 IEA DNA binding
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0005829 ISS cytosol
GO:0006200 IEA ATP catabolic process
GO:0008026 IEA ATP-dependent helicase activity
GO:0016020 IEA membrane
GO:0017053 IDA transcriptional repressor complex
GO:0019904 IEA protein domain specific binding
GO:0032797 ISS SMN complex
GO:0034719 ISS SMN-Sm protein complex
GO:0043065 IMP positive regulation of apoptotic process
GO:0045892 IEA negative regulation of transcription, DNA-templated
GO:0048477 IMP oogenesis
GO:0050810 IMP regulation of steroid biosynthetic process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000061204 ddx20 DEAD (Asp-Glu-Ala-Asp) box polypeptide 20 protein_coding Danio_rerio
ENSG00000064703 DDX20 DEAD (Asp-Glu-Ala-Asp) box polypeptide 20 protein_coding Homo_sapiens

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