C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: tropomyosin 3, gamma
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000027940 Tpm3 10090 + 3:90072649-90100902 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000029549 Tpm3-003 90079540-90100901 protein_coding
  ENSMUST00000062193 Tpm3-201 90072651-90100901 protein_coding
  ENSMUST00000118566 Tpm3-004 90079654-90100896 protein_coding
  ENSMUST00000119158 Tpm3-005 90079715-90098783 protein_coding
  ENSMUST00000119570 Tpm3-001 90072651-90100902 protein_coding
  ENSMUST00000121503 Tpm3-002 90072649-90092130 protein_coding
  ENSMUST00000127955 Tpm3-008 90080442-90087485 protein_coding
  ENSMUST00000131354 Tpm3-006 90079665-90089596 retained_intron
  ENSMUST00000133281 Tpm3-010 90087309-90089807 retained_intron
  ENSMUST00000133361 Tpm3-013 90087456-90088569 retained_intron
  ENSMUST00000136125 Tpm3-016 90090059-90098783 processed_transcript
  ENSMUST00000143281 Tpm3-015 90089631-90090472 retained_intron
  ENSMUST00000147430 Tpm3-011 90079665-90087877 retained_intron
  ENSMUST00000149115 Tpm3-009 90086371-90087547 retained_intron
  ENSMUST00000149432 Tpm3-007 90079891-90089077 protein_coding
  ENSMUST00000149734 Tpm3-014 90088061-90090042 retained_intron
  ENSMUST00000151798 Tpm3-012 90087439-90087915 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000029549ENSMUST00000062193ENSMUST00000118566ENSMUST00000119158ENSMUST00000119570ENSMUST00000121503ENSMUST00000131354ENSMUST00000133361ENSMUST00000149432ENSMUST00000149734
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000029549 35.563±8.72 8.768±2.05 74.856±6.61 58.747±25.98 29.597±2.95 43.503±8.04 11.250±1.93 34.230±2.89 38.189±21.34 66.098±4.85 N/A 34.357±15.92 101.482±27.28 19.010±3.41
ENSMUST00000062193 N/A 24.481±6.16 N/A N/A 7.900±0.00 27.263±0.00 N/A N/A 5.112±0.00 N/A 3.705±0.00 16.971±5.50 N/A N/A
ENSMUST00000118566 6.628±1.14 9.783±0.24 N/A N/A 10.751±3.22 N/A 2.515±0.00 N/A 7.732±3.06 20.928±1.18 3.004±0.00 8.992±0.68 20.848±0.00 N/A
ENSMUST00000119158 N/A N/A N/A 81.022±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000119570 N/A N/A N/A N/A 7.523±0.00 N/A N/A N/A N/A N/A 3.625±0.00 N/A N/A N/A
ENSMUST00000121503 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 225.399±139.03 N/A N/A N/A
ENSMUST00000131354 4.786±0.72 7.250±1.20 N/A N/A 6.554±0.78 7.573±1.05 2.093±0.36 N/A N/A 10.299±0.00 N/A 7.971±1.85 N/A 3.870±0.13
ENSMUST00000133361 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 151.413±0.00 295.266±98.55 93.670±0.00
ENSMUST00000149432 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 85.900±0.00
ENSMUST00000149734 N/A 25.251±0.00 N/A N/A 44.411±0.00 N/A N/A N/A N/A N/A N/A 45.083±24.29 218.010±63.40 15.361±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001725 ISO stress fiber
GO:0002102 IDA podosome
GO:0003779 IEA actin binding
GO:0005515 IPI protein binding
GO:0005737 IDA cytoplasm
GO:0030426 IDA growth cone
GO:0030863 IDA cortical cytoskeleton
GO:0031941 IDA filamentous actin
GO:0032154 IDA cleavage furrow
GO:0043005 IDA neuron projection
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000005162 tpm3 tropomyosin 3 protein_coding Danio_rerio
ENSG00000143549 TPM3 tropomyosin 3 protein_coding Homo_sapiens

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