C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tropomyosin 3, gamma
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000149432 Tpm3-007 ENSMUSG00000027940 10090 + 3:90079891-90089077 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; TestisENSMUST00000149432
Transcript ID Testis
ENSMUST00000149432 85.900±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001725 ISO stress fiber
GO:0002102 IDA podosome
GO:0005515 IPI protein binding
GO:0005737 IDA cytoplasm
GO:0030426 IDA growth cone
GO:0030863 IDA cortical cytoskeleton
GO:0031941 IDA filamentous actin
GO:0032154 IDA cleavage furrow
GO:0043005 IDA neuron projection

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000054763 tpma-202 protein_coding Danio_rerio 0 298
ENSDART00000039657 tpma-201 protein_coding Danio_rerio 0 298
ENST00000271850 TPM3-015 protein_coding Homo_sapiens 0 464
ENST00000302206 TPM3-011 protein_coding Homo_sapiens 0 521
ENST00000312970 TPM3-022 processed_transcript Homo_sapiens 0 364
ENST00000323144 TPM3-010 protein_coding Homo_sapiens 0 521
ENST00000328159 TPM3-006 protein_coding Homo_sapiens 0 466
ENST00000330188 TPM3-009 protein_coding Homo_sapiens 0 521
ENST00000330554 TPM3P8-001 processed_pseudogene Homo_sapiens 0 433
ENST00000338274 TPM3P7-001 processed_pseudogene Homo_sapiens 0 300
ENST00000341372 TPM3-005 protein_coding Homo_sapiens 0 372
ENST00000341485 TPM3-003 protein_coding Homo_sapiens 0 243
ENST00000368527 TPM3-019 processed_transcript Homo_sapiens 0 466
ENST00000368530 TPM3-001 protein_coding Homo_sapiens 0 520
ENST00000368531 TPM3-026 protein_coding Homo_sapiens 0 466
ENST00000368533 TPM3-004 protein_coding Homo_sapiens 0 466
ENST00000391998 TPM3P6-001 processed_pseudogene Homo_sapiens 0 370
ENST00000413233 TPM3P1-001 processed_pseudogene Homo_sapiens 0 375
ENST00000424846 TPM3P9-002 processed_transcript Homo_sapiens 0 375
ENST00000469717 TPM3-008 processed_transcript Homo_sapiens 0 287
ENST00000473036 TPM3-021 retained_intron Homo_sapiens 0 466
ENST00000492121 TPM3P9-001 transcribed_processed_pseudogene Homo_sapiens 0 375
ENST00000505010 TPM3-023 retained_intron Homo_sapiens 0 459
ENST00000509409 TPM3-016 nonsense_mediated_decay Homo_sapiens 0 287
ENST00000561804 RP11-618N24.1-001 processed_pseudogene Homo_sapiens 0 399
ENST00000567701 RP11-297L17.6-001 processed_pseudogene Homo_sapiens 0 438
ENST00000599541 AC243960.2-201 protein_coding Homo_sapiens 0 270
ENST00000600996 AC005795.1-001 processed_pseudogene Homo_sapiens 0 431
ENST00000611659 TPM3-201 protein_coding Homo_sapiens 0 466

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