C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: tropomyosin 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000143549 TPM3 9606 - 1:154155304-154194648 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000271850 TPM3-015 154157318-154192058 protein_coding
  ENST00000302206 TPM3-011 154157583-154178183 protein_coding
  ENST00000312970 TPM3-022 154157526-154183078 processed_transcript
  ENST00000323144 TPM3-010 154158670-154183164 protein_coding
  ENST00000328159 TPM3-006 154156694-154183119 protein_coding
  ENST00000330188 TPM3-009 154156364-154183205 protein_coding
  ENST00000341372 TPM3-005 154156366-154183181 protein_coding
  ENST00000341485 TPM3-003 154156364-154183208 protein_coding
  ENST00000368527 TPM3-019 154172067-154183816 processed_transcript
  ENST00000368530 TPM3-001 154167465-154192211 protein_coding
  ENST00000368531 TPM3-026 154158609-154183130 protein_coding
  ENST00000368533 TPM3-004 154155308-154183172 protein_coding
  ENST00000368545 TPM3-014 154156357-154172677 retained_intron
  ENST00000466010 TPM3-013 154187260-154191948 processed_transcript
  ENST00000469717 TPM3-008 154156359-154183147 processed_transcript
  ENST00000473036 TPM3-021 154172672-154183174 retained_intron
  ENST00000504663 TPM3-025 154169652-154170700 retained_intron
  ENST00000505010 TPM3-023 154171882-154176242 retained_intron
  ENST00000509409 TPM3-016 154157112-154183227 nonsense_mediated_decay
  ENST00000509601 TPM3-020 154170408-154183208 nonsense_mediated_decay
  ENST00000513769 TPM3-024 154157532-154171006 retained_intron
  ENST00000515609 TPM3-018 154191203-154194648 protein_coding
  ENST00000611659 TPM3-201 154155304-154183249 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000302206ENST00000312970ENST00000323144ENST00000328159ENST00000330188ENST00000341372ENST00000341485ENST00000368530ENST00000368545ENST00000509409ENST00000509601
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000302206 N/A N/A N/A 21.919±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000312970 60.023±0.00 N/A 12.072±0.00 N/A 47.032±0.00 24.766±0.00 N/A 12.997±0.00 21.826±0.00 22.307±0.00 N/A 102.184±68.45 114.621±0.00 39.960±0.00
ENST00000323144 N/A N/A N/A 8.827±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000328159 N/A N/A N/A 23.451±0.00 N/A 13.179±0.00 N/A N/A N/A 8.517±0.00 N/A N/A N/A 22.417±0.00
ENST00000330188 N/A N/A N/A 36.107±18.87 18.744±0.00 15.006±0.00 2.446±0.00 N/A N/A 28.724±0.00 N/A N/A N/A N/A
ENST00000341372 N/A N/A N/A N/A N/A N/A N/A 20.964±16.33 18.377±0.00 25.213±13.09 N/A 23.044±15.88 50.186±4.84 14.333±0.00
ENST00000341485 90.782±0.00 91.808±0.00 6.861±0.00 6.423±0.00 25.867±3.66 33.700±8.09 8.724±6.20 25.386±17.27 14.560±0.29 33.689±17.51 20.332±0.00 48.879±28.78 50.015±11.02 21.667±0.31
ENST00000368530 N/A N/A N/A N/A 27.667±0.00 N/A 46.916±0.00 N/A N/A N/A 471.726±305.45 N/A N/A 20.097±0.00
ENST00000368545 N/A N/A N/A N/A N/A N/A 2.922±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000509409 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 52.237±32.04 40.778±0.00 20.659±0.00
ENST00000509601 N/A N/A N/A N/A N/A N/A N/A 21.495±0.00 N/A N/A N/A N/A N/A N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001725 IDA stress fiber
GO:0002102 IEA podosome
GO:0003674 ND molecular_function
GO:0003779 IEA actin binding
GO:0005515 IEA protein binding
GO:0005737 IEA cytoplasm
GO:0005829 TAS cytosol
GO:0005856 TAS cytoskeleton
GO:0005862 TAS muscle thin filament tropomyosin
GO:0006928 TAS cellular component movement
GO:0006936 TAS muscle contraction
GO:0007165 IEA signal transduction
GO:0030049 TAS muscle filament sliding
GO:0030426 IEA growth cone
GO:0030863 IEA cortical cytoskeleton
GO:0031941 IEA filamentous actin
GO:0032154 IEA cleavage furrow
GO:0043005 IEA neuron projection
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000005162 tpm3 tropomyosin 3 protein_coding Danio_rerio
ENSMUSG00000027940 Tpm3 tropomyosin 3, gamma protein_coding Mus_musculus

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