C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: pleiotropic regulator 1, PRL1 homolog (Arabidopsis)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000027998 Plrg1 10090 + 3:83055522-83072355 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000029628 Plrg1-002 83055532-83072289 nonsense_mediated_decay
  ENSMUST00000122128 Plrg1-003 83055555-83072172 protein_coding
  ENSMUST00000135813 Plrg1-005 83068973-83070164 retained_intron
  ENSMUST00000150268 Plrg1-001 83055522-83072355 protein_coding
  ENSMUST00000151915 Plrg1-004 83068044-83069065 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000029628ENSMUST00000122128ENSMUST00000150268
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000029628 N/A 6.017±1.99 N/A 11.300±0.00 N/A N/A N/A N/A N/A 3.201±0.00 N/A 15.718±0.00 15.500±4.52 10.434±0.00
ENSMUST00000122128 N/A N/A N/A 15.677±0.00 4.850±0.00 N/A N/A 2.593±0.00 6.802±0.00 N/A 1.356±0.00 17.114±0.00 20.756±6.58 10.740±0.00
ENSMUST00000150268 17.779±4.70 9.411±3.69 19.187±0.76 30.736±8.77 23.719±1.88 11.658±5.14 11.520±2.56 17.314±2.83 19.791±8.51 22.481±1.44 9.005±0.70 24.287±5.28 29.811±8.03 16.986±0.44

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008D1 CIL_0008D1_0002 VISTA 3:82670874-83271669

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005634 IEA nucleus
GO:0005662 ISS DNA replication factor A complex
GO:0006397 IEA mRNA processing
GO:0008380 IEA RNA splicing
GO:0034504 IMP protein localization to nucleus
GO:0071013 IEA catalytic step 2 spliceosome
GO:1900087 IMP positive regulation of G1/S transition of mitotic cell cycle

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000037283 plrg1 pleiotropic regulator 1 protein_coding Danio_rerio
ENSG00000171566 PLRG1 pleiotropic regulator 1 protein_coding Homo_sapiens

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