C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: pleiotropic regulator 1, PRL1 homolog (Arabidopsis)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000150268 Plrg1-001 ENSMUSG00000027998 10090 + 3:83055522-83072355 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000150268
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000150268 17.779±4.70 9.411±3.69 19.187±0.76 30.736±8.77 23.719±1.88 11.658±5.14 11.520±2.56 17.314±2.83 19.791±8.51 22.481±1.44 9.005±0.70 24.287±5.28 29.811±8.03 16.986±0.44

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008D1 CIL_0008D1_0002 VISTA 3:82670874-83271669

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005634 IEA nucleus
GO:0005662 ISS DNA replication factor A complex
GO:0006397 IEA mRNA processing
GO:0008380 IEA RNA splicing
GO:0034504 IMP protein localization to nucleus
GO:0071013 IEA catalytic step 2 spliceosome
GO:1900087 IMP positive regulation of G1/S transition of mitotic cell cycle

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000302078 PLRG1-003 protein_coding Homo_sapiens 0 1502
ENST00000499023 PLRG1-001 protein_coding Homo_sapiens 0 1916
ENST00000503251 PLRG1-012 protein_coding Homo_sapiens 0 241
ENST00000504341 PLRG1-006 protein_coding Homo_sapiens 0 771
ENST00000506192 PLRG1-002 nonsense_mediated_decay Homo_sapiens 0 566
ENST00000506627 PLRG1-013 nonsense_mediated_decay Homo_sapiens 0 529
ENST00000506918 PLRG1-009 retained_intron Homo_sapiens 0 366
ENST00000509975 PLRG1-004 nonsense_mediated_decay Homo_sapiens 0 466
ENST00000512719 PLRG1-008 retained_intron Homo_sapiens 0 503
ENST00000512773 PLRG1-011 retained_intron Homo_sapiens 0 361

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