C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: pleiotropic regulator 1, PRL1 homolog (Arabidopsis)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000122128 Plrg1-003 ENSMUSG00000027998 10090 + 3:83055555-83072172 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastKidneyLiverMuscleOvaryPlacentaTestisENSMUST00000122128
Transcript ID Brain Breast Kidney Liver Muscle Ovary Placenta Testis
ENSMUST00000122128 15.677±0.00 4.850±0.00 2.593±0.00 6.802±0.00 1.356±0.00 17.114±0.00 20.756±6.58 10.740±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008D1 CIL_0008D1_0002 VISTA 3:82670874-83271669

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0034504 IMP protein localization to nucleus
GO:1900087 IMP positive regulation of G1/S transition of mitotic cell cycle

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000302078 PLRG1-003 protein_coding Homo_sapiens 0 1873
ENST00000499023 PLRG1-001 protein_coding Homo_sapiens 0 1502
ENST00000503251 PLRG1-012 protein_coding Homo_sapiens 0 241
ENST00000504341 PLRG1-006 protein_coding Homo_sapiens 0 392
ENST00000506192 PLRG1-002 nonsense_mediated_decay Homo_sapiens 0 566
ENST00000506627 PLRG1-013 nonsense_mediated_decay Homo_sapiens 0 529
ENST00000506918 PLRG1-009 retained_intron Homo_sapiens 0 366
ENST00000509975 PLRG1-004 nonsense_mediated_decay Homo_sapiens 3e-16 90
ENST00000512719 PLRG1-008 retained_intron Homo_sapiens 1e-20 104
ENST00000512773 PLRG1-011 retained_intron Homo_sapiens 0 361

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