C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: GAR1 ribonucleoprotein homolog (yeast)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000028010 Gar1 10090 - 3:129824912-129831396 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000029643 Gar1-001 129824912-129831396 protein_coding
  ENSMUST00000127864 Gar1-004 129825552-129827280 retained_intron
  ENSMUST00000128441 Gar1-002 129825571-129831360 processed_transcript
  ENSMUST00000134174 Gar1-006 129824916-129829366 protein_coding
  ENSMUST00000143545 Gar1-005 129824919-129825674 retained_intron
  ENSMUST00000149071 Gar1-003 129826843-129830932 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000029643ENSMUST00000134174ENSMUST00000143545ENSMUST00000149071
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000029643 2.480±1.46 6.683±0.77 11.888±4.27 8.975±3.28 3.126±2.13 2.431±0.85 1.766±0.32 3.059±0.64 21.593±23.60 4.515±0.39 2.728±1.45 7.088±1.26 10.070±5.20 3.643±0.45
ENSMUST00000134174 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 9.499±0.00 N/A
ENSMUST00000143545 7.075±3.26 N/A 9.402±0.00 33.113±0.00 4.677±1.65 5.634±1.28 4.764±3.15 8.019±2.18 4.520±1.43 6.163±1.33 3.015±0.62 25.909±23.63 46.410±58.19 17.917±9.65
ENSMUST00000149071 N/A N/A N/A 31.587±0.00 N/A N/A N/A N/A N/A N/A 0.886±0.00 25.908±20.90 43.451±52.82 12.562±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001522 IEA pseudouridine synthesis
GO:0001651 ISO dense fibrillar component
GO:0005634 IEA nucleus
GO:0005730 IEA nucleolus
GO:0006364 IEA rRNA processing
GO:0030515 ISO snoRNA binding
GO:0031429 IEA box H/ACA snoRNP complex
GO:0042254 IEA ribosome biogenesis
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000076526 gar1 GAR1 ribonucleoprotein homolog (yeast) protein_coding Danio_rerio
ENSG00000109534 GAR1 GAR1 ribonucleoprotein protein_coding Homo_sapiens

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