C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: GAR1 ribonucleoprotein homolog (yeast)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000029643 Gar1-001 ENSMUSG00000028010 10090 - 3:129824912-129831396 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000029643
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000029643 2.480±1.46 6.683±0.77 11.888±4.27 8.975±3.28 3.126±2.13 2.431±0.85 1.766±0.32 3.059±0.64 21.593±23.60 4.515±0.39 2.728±1.45 7.088±1.26 10.070±5.20 3.643±0.45

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001522 IEA pseudouridine synthesis
GO:0001651 ISO dense fibrillar component
GO:0005634 IEA nucleus
GO:0005730 IEA nucleolus
GO:0006364 IEA rRNA processing
GO:0030515 ISO snoRNA binding
GO:0031429 IEA box H/ACA snoRNP complex
GO:0042254 IEA ribosome biogenesis
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000226796 GAR1-003 protein_coding Homo_sapiens 0 627
ENST00000394631 GAR1-001 protein_coding Homo_sapiens 0 627
ENST00000503671 GAR1-004 retained_intron Homo_sapiens 0 394
ENST00000506840 GAR1-006 retained_intron Homo_sapiens 0 547

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