C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: thrombospondin 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000028047 Thbs3 10090 + 3:89215180-89226837 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000029682 Thbs3-001 89215180-89226837 protein_coding
  ENSMUST00000119084 Thbs3-003 89215233-89226804 protein_coding
  ENSMUST00000126315 Thbs3-002 89215227-89226837 retained_intron
  ENSMUST00000126372 Thbs3-009 89225177-89226563 retained_intron
  ENSMUST00000126700 Thbs3-005 89221152-89223176 processed_transcript
  ENSMUST00000136881 Thbs3-007 89224289-89226703 nonsense_mediated_decay
  ENSMUST00000142051 Thbs3-011 89215205-89218085 protein_coding
  ENSMUST00000144980 Thbs3-006 89224140-89225557 retained_intron
  ENSMUST00000146435 Thbs3-004 89217420-89219087 retained_intron
  ENSMUST00000153129 Thbs3-010 89226250-89226786 retained_intron
  ENSMUST00000155924 Thbs3-008 89224330-89225425 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartLungMuscleOvaryPlacentaTestisENSMUST00000029682ENSMUST00000119084ENSMUST00000126315ENSMUST00000126700
Transcript ID Adipose Bladder Brain Breast Colon Heart Lung Muscle Ovary Placenta Testis
ENSMUST00000029682 26.122±9.95 18.321±2.19 16.963±6.24 17.480±4.90 15.145±2.40 5.068±1.12 38.387±4.28 1.658±0.17 16.673±2.85 4.689±2.52 17.895±3.98
ENSMUST00000119084 N/A N/A N/A 3.947±0.00 N/A N/A N/A N/A 5.209±0.89 N/A N/A
ENSMUST00000126315 5.315±0.04 7.318±1.39 16.722±2.78 3.502±0.00 5.470±0.00 N/A 12.127±0.49 N/A 7.351±1.40 N/A 4.434±0.00
ENSMUST00000126700 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 58.862±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003417 IGI growth plate cartilage development
GO:0005509 IEA calcium ion binding
GO:0005576 IEA extracellular region
GO:0007155 IEA cell adhesion
GO:0008201 ISO heparin binding
GO:0043931 IMP ossification involved in bone maturation
GO:0048471 IEA perinuclear region of cytoplasm
GO:0060346 IMP bone trabecula formation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000012060 thbs3b thrombospondin 3b protein_coding Danio_rerio
ENSDARG00000077641 thbs3a thrombospondin 3a protein_coding Danio_rerio
ENSG00000169231 THBS3 thrombospondin 3 protein_coding Homo_sapiens

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