C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: thrombospondin 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000169231 THBS3 9606 - 1:155195588-155209051 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000368378 THBS3-001 155195588-155207897 protein_coding
  ENST00000428962 THBS3-010 155197897-155207899 nonsense_mediated_decay
  ENST00000457183 THBS3-009 155195666-155207917 protein_coding
  ENST00000460050 THBS3-006 155200899-155203305 processed_transcript
  ENST00000465596 THBS3-005 155198071-155200049 processed_transcript
  ENST00000469769 THBS3-004 155195845-155197622 retained_intron
  ENST00000486260 THBS3-007 155200456-155209051 processed_transcript
  ENST00000496332 THBS3-008 155200617-155202254 retained_intron
  ENST00000498500 THBS3-003 155195588-155196442 retained_intron
  ENST00000541576 THBS3-201 155195590-155207981 protein_coding
  ENST00000541990 THBS3-202 155195791-155207899 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000368378ENST00000457183ENST00000460050ENST00000469769ENST00000498500ENST00000541576ENST00000541990
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000368378 2.596±0.00 7.841±0.00 N/A 7.532±0.00 2.469±1.76 N/A 2.844±0.00 1.313±0.00 6.222±0.00 N/A 9.084±5.29 4.298±0.97 8.341±2.77
ENST00000457183 1.918±0.00 N/A N/A 5.614±0.00 3.089±0.00 N/A 2.663±0.00 N/A N/A N/A N/A N/A 4.281±0.00
ENST00000460050 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.698±0.00 N/A N/A N/A
ENST00000469769 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.214±0.00 N/A N/A N/A
ENST00000498500 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.570±0.00 N/A N/A 17.294±0.00
ENST00000541576 N/A N/A 0.519±0.00 N/A N/A 1.916±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000541990 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.049±0.00 N/A 9.341±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000LQ CIL_0000LQ_0003 CGP 1:155195588-155213824

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003417 IEA growth plate cartilage development
GO:0005509 IEA:NAS calcium ion binding
GO:0005515 IEA protein binding
GO:0005576 IEA:TAS extracellular region
GO:0007155 IEA cell adhesion
GO:0007160 NAS cell-matrix adhesion
GO:0008201 IEA:IDA heparin binding
GO:0043931 IEA ossification involved in bone maturation
GO:0048471 IDA perinuclear region of cytoplasm
GO:0060346 IEA bone trabecula formation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000012060 thbs3b thrombospondin 3b protein_coding Danio_rerio
ENSDARG00000077641 thbs3a thrombospondin 3a protein_coding Danio_rerio
ENSMUSG00000028047 Thbs3 thrombospondin 3 protein_coding Mus_musculus

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