C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: thrombospondin 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000029682 Thbs3-001 ENSMUSG00000028047 10090 + 3:89215180-89226837 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartLungMuscleOvaryPlacentaTestisENSMUST00000029682
Transcript ID Adipose Bladder Brain Breast Colon Heart Lung Muscle Ovary Placenta Testis
ENSMUST00000029682 26.122±9.95 18.321±2.19 16.963±6.24 17.480±4.90 15.145±2.40 5.068±1.12 38.387±4.28 1.658±0.17 16.673±2.85 4.689±2.52 17.895±3.98

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003417 IGI growth plate cartilage development
GO:0005509 IEA calcium ion binding
GO:0005576 IEA extracellular region
GO:0007155 IEA cell adhesion
GO:0008201 ISO heparin binding
GO:0043931 IMP ossification involved in bone maturation
GO:0048471 IEA perinuclear region of cytoplasm
GO:0060346 IMP bone trabecula formation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000368378 THBS3-001 protein_coding Homo_sapiens 0 3908
ENST00000428962 THBS3-010 nonsense_mediated_decay Homo_sapiens 0 1029
ENST00000457183 THBS3-009 protein_coding Homo_sapiens 0 2996
ENST00000460050 THBS3-006 processed_transcript Homo_sapiens 0 1072
ENST00000465596 THBS3-005 processed_transcript Homo_sapiens 0 370
ENST00000469769 THBS3-004 retained_intron Homo_sapiens 0 545
ENST00000486260 THBS3-007 processed_transcript Homo_sapiens 0 2113
ENST00000496332 THBS3-008 retained_intron Homo_sapiens 0 316
ENST00000498500 THBS3-003 retained_intron Homo_sapiens 0 472
ENST00000541576 THBS3-201 protein_coding Homo_sapiens 0 3779
ENST00000541990 THBS3-202 protein_coding Homo_sapiens 0 2333

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