C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: polymerase (RNA) I polypeptide E
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000133157 Polr1e-001 ENSMUSG00000028318 10090 + 4:45018583-45033692 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000133157
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000133157 0.928±0.26 0.981±0.15 1.675±0.96 1.230±0.59 1.089±0.47 1.007±0.14 0.837±0.53 0.844±0.64 0.799±0.19 0.205±0.07 2.840±1.93 0.375±0.00 1.303±0.19

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000843 CIL_000843_0002 VISTA 4:44530265-45131018
CIL_0008YP CIL_0008YP_0002 VISTA 4:44551630-45152605
CIL_00080S CIL_00080S_0002 VISTA 4:44617363-45218981
CIL_0001OS CIL_0001OS_0002 CGP 4:44991242-45036565
CIL_00039W CIL_00039W_0002 CGP 4:45018583-45084604

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001054 IBA RNA polymerase I activity
GO:0001179 IDA RNA polymerase I transcription factor binding
GO:0001189 IDA RNA polymerase I transcriptional preinitiation complex assembly at the promoter for the nuclear large rRNA transcript
GO:0003677 IEA DNA binding
GO:0005515 IPI protein binding
GO:0005654 TAS nucleoplasm
GO:0005730 IDA nucleolus
GO:0005736 IBA DNA-directed RNA polymerase I complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000377792 POLR1E-002 protein_coding Homo_sapiens 0 989
ENST00000377798 POLR1E-001 protein_coding Homo_sapiens 0 1035
ENST00000442009 POLR1E-201 protein_coding Homo_sapiens 0 324

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