C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: lysine (K)-specific demethylase 4C
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000028397 Kdm4c 10090 + 4:74242497-74405860 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000030102 Kdm4c-001 74251936-74405860 protein_coding
  ENSMUST00000077851 Kdm4c-006 74242497-74405860 protein_coding
  ENSMUST00000148753 Kdm4c-003 74262810-74269682 processed_transcript
  ENSMUST00000149295 Kdm4c-005 74262809-74333742 protein_coding
  ENSMUST00000150439 Kdm4c-002 74262810-74273659 processed_transcript
  ENSMUST00000156065 Kdm4c-004 74262809-74331560 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000030102ENSMUST00000077851ENSMUST00000156065
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000030102 2.356±0.77 1.152±0.35 4.621±0.03 5.743±2.23 1.817±0.37 1.385±0.46 1.214±0.27 2.201±0.13 1.400±0.71 2.579±0.25 1.777±0.39 2.784±2.55 5.530±1.08 0.864±0.29
ENSMUST00000077851 N/A 0.850±0.00 N/A N/A N/A N/A N/A N/A 0.435±0.11 N/A N/A N/A N/A N/A
ENSMUST00000156065 N/A N/A N/A N/A N/A 0.287±0.00 N/A N/A 0.298±0.00 N/A N/A 1.075±0.24 N/A 0.284±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001D7 CIL_0001D7_0002 CGP 4:74242497-75278305

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0008270 IEA zinc ion binding
GO:0019899 IPI enzyme binding
GO:0032454 ISS histone demethylase activity (H3-K9 specific)
GO:0033169 ISS histone H3-K9 demethylation
GO:0050681 IPI androgen receptor binding
GO:0051213 IEA dioxygenase activity
GO:0055114 IEA oxidation-reduction process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000061504 KDM4C lysine (K)-specific demethylase 4C protein_coding Danio_rerio
ENSG00000107077 KDM4C lysine (K)-specific demethylase 4C protein_coding Homo_sapiens
ENSG00000274527 KDM4C lysine-specific demethylase 4C isoform 4 protein_coding Homo_sapiens

Loading